Gene detail

Detailed information of KXJ26481.1 in Exaiptasia diaphana

Genomic Location: LJWW01000029.1:735767...740777
NR annotation: KXJ26481.1, putative chitinase 3 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ26481.1

ATGCAGTTCTACACACTGTTGCTGTTGGCATTGGCTTCGTATGCCGCAACAGCCAACTACGTACGAGTATGTTATCACACCAACTGGTCTCAGTACAGACAAGGGCGTGCCAAATTCTGGCCTGAGAATATCCCTGCAGATCTTTGTACTCATTTAATGTACTCTTTCGCCAAGATTAACCAAAACAACGAGCTCGCCATGTACGAGTGGAATGACGATAAACTTTATCCAAGATTCAATGCTCTCAAGCAGACAAATCCACAGCTAAAGACCTTACTGGCAGTTGGAGGATGGAACCACGAGAACGCCAACAGTCCATTCTCGCGCATGGTCAAAACTGCTGCAACAAGAAAGGTCTTCATTGACTCAGTCATTCGAGTTTTGAGAMAATGGGATTTCGATGGGTTGGACCTGGATTGGGAATACCCCGCAACCCGTGGAGGATCTCCACCCGAAGACAAGCAAAGGTTTACCATCCTTTGTCAAGAGCTGCTGAATGCATTCATTGCCGAGGGAAAGTCATCGGGACGTCCACGACTGTTGCTTACTGCCGCGGTGTCTGCCGGTAAAAATACCATCGACAAGGCCTATGAAGTGGACAAGATTGCCAAAATTCTTGACTTGATCAACCTGATGGCTTACGACTTGCGAGGGAAGTGGGAAAAGTTCACTGGACATCATACAGCACTAGTGGGTCCTCCTGACGATATCCTAACTGTTCAGTACGCCACACAGTACTGGATTGATAAAGGTACCCCACCCAGTAAAATCGCCCTTGGCCTTGGCACATACGGACGATCATTCAAGCTGGTTGATATGAACAAAAATGGCATTGGTGCGCCTGCAAATGGCAATCCTCCACGTGGTCAATACACCAGAGAGTCTGGATTCCTGTCATATTACGAGATTTGTGATATGATGCCAAAAATGAAGATCACAAAAACAGATGAAAGCGCAGTYAAAGCTCCGTATGGCTACTTGAAGCAGGATTGGGCCTCAGTATGGGTTGGCTATGACGATGAGCGCAGTCTTCAGCTGAAAGTTGAACARGTTATTAAAGCTAAAGGCCTTGCTGGTGCCATGTTCTGGGCCCTGGATCTTGATGACTTTAGCGGCCAGTCTTGTGGAAAGGGTAATTATCCATTGATGACCGCAGTCAAGAAGTACCTTGGAGGTTATAGTCCCCCACCCCCACCAACCAATGGCCCTCAACCACCTCCAACGGACCCACCTGTAGTTACAACCAACGCACCTCCAACTGTTGGTCCTGGCCCCGTGACTCCTGCACCAACCCAGCCTCCAACTGGMGGCAAGTGCGTCGCTATTCCTCCCTATAATGGTGCAGCCAACTACGTACGAGTATGCTATCACACCAACTGGTCTCAGTATAGGCCAGGCCGTGGCAGGTTCTGGCCTGAGAATATCCCTGCAGATCTTTGTACCCATTTAATGTACTCTTTCGCCAAGATTAACCAAAGAAACGAGCTCGCCATGTACGAGTGGAATGACGATAAACTTTATCCAAGATTCAACGCTCTTAAGAAGAAAAATCCACAGTTAAAGACCTTACTGGCAGTTGGAGGATGGAACCACGAGAACGCCAACAGCCCATTCTCGCGCATGGTCAAAACTGCTGCAACAAGAAAAGTCTTCATTGACTCAGTCATTCGAGTTTTGAGAAAATGGGATTTCGATGGGTTGGACCTGGATTGGGAATACCCCGCAACCCGTGGAGGATCTCCACCCGAAGACAAGCAAAGGTTTACCATCCTTTGTCAAGAGCTGCTGAATGCATTCATTGCCGAGGGAAAGTCATCGGGACGTCCACGACTGTTGCTCACTGCCGCGGTGTCTGCCGGTAAGAAGACCATCGACAAGGCCTACGAAGTGAGCAAAATTGGACAAATTCTTGACTTGATCAACCTTATGGCTTACGACCTGCGAGGACAGTGGGAGAGTCRCACTGGACATCACACAGCTCTGGTTGGGCCTCCGGGAGAAATCTTGACAGTGAAGTTTGCTACACAGTACTGGATTGATAAAGGTGCTCCACCCAGTAAGATCGTCCTCGGCCTTGGTACATATGGTAGAGCTTTTAAACTCAAAGAAGCTAAAAATCATGGGCTTGGTGCACCAAAAGCTGATTGGATGAAGGCTAAAARGGGTAAATACACTAGGGAATCTGGATTTCTGTCATATTACGAGATATGTGATGATATCCGCGCAGGMATGAAAGTCGTTAAAAGTGATGAAAACAAGGTAAAGGCACCTTACGGCTACTTAAATACCGACTGGGTTGGCTACGATGACGAGCGCAGTCTTCAGCTGAAATTTGAAGAAGTTATTAAAGCTAAAGGCCTTGCTGGTGCCATGTTCTGGGCCCTGGATCTTGATGACTTTAGTGGCCAATCTTGTGGAAAGGGTAATTATCCACTGATGAACGCGGTCAAGAAGTACCTTGGAGGTTATGTTCCTCCAAACCCACCTCCTTCGCCTCCAACACCTGCACCTCCTACAGGCAATCCTCCTCCACCTCCTCCTCCACCAACTCCTCCACCTCCAACACCTGCACCACCTACAGGCAATCCTCCTCCACCTCCTCCTCCACCTCCACCTCCAACTGAGCCTCCAGTGCCTGGTGGTTGTGTTTCCTCCTCCTCCACCTCCACCTCCAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W5U2	Probable chitinase 10 OS=Drosophila melanogaster OX=7227 GN=Cht10 PE=2 SV=2
Q13231	Chitotriosidase-1 OS=Homo sapiens OX=9606 GN=CHIT1 PE=1 SV=1
Q9BZP6	Acidic mammalian chitinase OS=Homo sapiens OX=9606 GN=CHIA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000804 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00704 all species →	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011583 all species →	Domain	Chitinase II	Interproscan
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR029070 all species →	Homologous_superfamily	Chitinase insertion domain superfamily	Interproscan
IPR001579 all species →	Active_site	Glycosyl hydrolases family 18 (GH18) active site	Interproscan
IPR050314 all species →	Family	Glycosyl Hydrolase Family 18	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11177 all species →	CHITINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0006032 all species →	Biological Process	chitin catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01183	E3.2.1.14; chitinase	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ26481.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

265.7Max TPM

96.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	100.32	265.72
whole animal · symbiotic	36	36	91.59	224.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	265.72
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	265.08
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	264.58
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	253.16
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	247.36
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	245.25
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	136.46
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	111.00
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	109.55
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	106.11
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	105.77
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	103.82
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	101.17
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	100.10
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	99.54
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	96.90
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	95.89
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	95.76
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	91.08
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	87.77
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	86.83
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	85.19
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.64
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.60
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.42
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.32
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.07
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.99
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.64
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.05
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.41
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.17
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.88
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.32
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	224.73
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	207.88
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	184.10
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	159.67
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	159.66
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	157.77
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	157.08
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	149.42
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	132.46
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.30
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.37
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.19
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.85
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.20
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.11
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.91
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.48
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.72
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.04
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.54
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.46
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.32
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.12
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.01
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.29
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.04
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.87
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.98
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.08
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.66
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.65
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.69
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.62
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.91
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.34
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.55

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.