Gene detail

Detailed information of KXJ26554.1 in Exaiptasia diaphana

Genomic Location: LJWW01000028.1:576062...579079
NR annotation: XP_020901462.1, tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1R4	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens OX=9606 GN=DUS1L PE=1 SV=1
Q8C2P3	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus OX=10090 GN=Dus1l PE=2 SV=1
Q8K582	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus OX=10116 GN=Dus1l PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001339 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01207 all species →	Dus	Dihydrouridine synthase (Dus)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018517 all species →	Conserved_site	tRNA-dihydrouridine synthase, conserved site	Interproscan
IPR035587 all species →	Domain	DUS-like, FMN-binding domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11082 all species →	TRNA-DIHYDROURIDINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0017150 all species →	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05542	DUS1; tRNA-dihydrouridine synthase 1	EC:1.3.1.88	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ26554.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

62TPM > 0

2Conditions

40.1Max TPM

13.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	13.65	40.08
whole animal · symbiotic	36	31	13.23	19.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.08
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.32
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.72
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.14
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.80
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.16
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.99
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.69
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.49
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.10
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.00
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.88
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.74
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.16
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.07
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.75
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.71
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.68
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.56
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.43
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.29
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.15
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.14
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.80
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.40
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.49
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.48
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.50
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.20
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.70
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.81
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.92
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.69
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.25
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.15
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.06
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.85
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.54
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.47
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.89
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.72
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.55
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.95
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.89
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.63
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.62
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.59
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.42
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.03
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.01
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.79
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.61
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.39
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.91
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.45
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.36
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.59
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.49
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.28
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.82
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.38
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.82
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.