Gene detail

Detailed information of KXJ26656.1 in Exaiptasia diaphana

Genomic Location: LJWW01000028.1:508401...515902
NR annotation: XP_020901459.1, splicing factor U2AF 65 kDa subunit [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26368	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF2 PE=1 SV=4
P26369	Splicing factor U2AF 65 kDa subunit OS=Mus musculus OX=10090 GN=U2af2 PE=1 SV=3
Q24562	Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster OX=7227 GN=U2af50 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003692 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006529 all species →	Family	U2 snRNP auxilliary factor, large subunit, splicing factor	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23139 all species →	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000243 all species →	Cellular Component	commitment complex	Interproscan
GO:0008187 all species →	Molecular Function	poly-pyrimidine tract binding	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0030628 all species →	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0089701 all species →	Cellular Component	U2AF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12837	U2AF2; splicing factor U2AF 65 kDa subunit	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ26656.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

106.8Max TPM

52.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	42.63	81.36
whole animal · symbiotic	36	36	62.64	106.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	81.36
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.20
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.92
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.50
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.11
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.02
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.04
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.92
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.82
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.23
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.87
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.87
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.67
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.22
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.79
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.78
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.52
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.49
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.47
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.06
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.66
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.16
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.07
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.33
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.01
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.75
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.55
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.31
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.18
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.44
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.34
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.80
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.40
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.01
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	106.81
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	96.09
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.71
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.04
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	76.87
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	76.75
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.35
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.07
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.91
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.35
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.62
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.89
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.97
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.93
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.71
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.67
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.29
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.73
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.33
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.16
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.98
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.87
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.53
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.30
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.73
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.64
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.64
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.33
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.19
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.07
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.95
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.45
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.08
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.07
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.74
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.08

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.