Gene detail

Detailed information of KXJ26720.1 in Exaiptasia diaphana

Genomic Location: LJWW01000027.1:53375...62016
NR annotation: KXJ26720.1, putative methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V9A7	Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Mccc2 PE=2 SV=1
Q3ULD5	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus OX=10090 GN=Mccc2 PE=1 SV=1
Q8T2J9	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=mccb PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001323 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01039 all species →	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR011762 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR034733 all species →	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR011763 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR045190 all species →	Family	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22855 all species →	ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0004485 all species →	Molecular Function	methylcrotonoyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006552 all species →	Biological Process	L-leucine catabolic process	Interproscan
GO:1905202 all species →	Cellular Component	methylcrotonoyl-CoA carboxylase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01969	MCCC2, accD1; 3-methylcrotonyl-CoA carboxylase beta subunit	EC:6.4.1.4	Valine, leucine and isoleucine degradation	ko00280	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ26720.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

42.4Max TPM

11.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	11.41	42.36
whole animal · symbiotic	36	32	11.44	28.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.36
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.72
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.93
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.43
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.12
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.04
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.65
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.56
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.55
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.83
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.64
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.52
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.27
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.09
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.05
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.97
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.92
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.83
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.68
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.40
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.37
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.13
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.01
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.90
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.86
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.86
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.73
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.55
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.48
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.39
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.11
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.09
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.75
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.48
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.68
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.10
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.08
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.96
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.42
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.19
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.13
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.73
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.66
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.30
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.20
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.15
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.87
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.85
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.70
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.53
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.41
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.00
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.78
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.74
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.65
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.56
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.02
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.97
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.66
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.60
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.58
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.45
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.98
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.58
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.98
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.