Gene detail

Detailed information of KXJ26825.1 in Exaiptasia diaphana

Genomic Location: LJWW01000026.1:603563...614457
NR annotation: XP_020900544.1, uncharacterized protein LOC110239175 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ26825.1

ATGGAAGAGTTTGAAGATGATATTTTTGACCGCAACATTGATCAGCTAGATGTAAGAGAAACACCAAGATGGGAACTTTCTGAGGAGGAAGATGAACCATGTGATGCTAATCATATAGCACCTCTTGTCAATCAACAGAAAGAAGAAAAGAGTTCAAGAGTTTCTCAACAAGCCAACCCTTCATCTATTACAACTATCACCAGCATACAATCTAACGGAAGGCCAACCATMAACCCTATTTACCAGACAAAAATTGTGAAGGGGTTTCAACAGATGCCAAGGCAAGGGATTCCTGTACAATCACAAAGTCCAGTTCTTAATAATGGTGGGCTAAGTAGCACAAGTACAACAGAAAGTGTTAAAACAGTGATGTCACCTATATTGTTACCAAGGAACTTGGATAAGAAAAAGATTGAAGAACTTGTTAATGCTGCTTACAAGGATGATGGTGATTCTGTCAAGGATTTTGGTGCAGCCGAGAGAGAGAAAAGACCCACAGTCAATGCTTCCACAGCAAACAGCCCAACAAAAGATGTCATGAGTAGGCTTCCACCATGGGAAGATGATGATGCTGACTCAATCAAGGATTACACAGGCAATGACAGGAAAAAGGAAGAACAGTATATGGTGAGAACCGACGAGGCAATCTACCAGAGAGCTTCAGAGGAACACATCAAAAGACCTCCATTATGGCATGATGATGAGGTTGACTCTCTCAGGGACTTTGGACGTATTTTAAGCAAGCAAGAAGTACCATCTGGGATGATGAGCCAACAGTTGAGTAGAGTTCCATCTGATGAAGAGATTTGCCTGTCACCCCCCTGGATTGAGGAAGAGGATGGACAAGACACGAATATCCAGTGTCCAGAAGCAGACCTCAAGAGTTTTACGGTTAGGAAAATGATGGCAGAACAACGTATCCAACAAGTCCCTCCCTGGCATGAAGATGATTCTACAAAGAATTATGCTGAATTCTGGAAGCTTGGATCAAAAGAGAATTCCAGACGTCCATCAGATGAAAATATTTACCTTACCCCACCATGGATGGAAGATGATCGGGAATCTTGTGGGAACCAAAGTGCATCGTCGCAAACGACTCTTGATGAGAAGCGATTCATTGAGGAAGAAGTGAGAACGTCTAGTGTGGCCCCATCCAAACTACAAGTCTTGAATGAMGAACAGAACGATTCGACCACAGAGAACCAGCTACTAGGGCGTGACAGTGGTTTCTGTAGTGAACAAGACCAAAATCAACAGACACAAGGTTTCCCCCAAGGTCAGGACGTTGAGTCGATCAAAACCACTACGGTTCCAAATGACATGATGACTTGCCTACCCARAGTGCCAAACTCTAAAGAGACAATAGATACTGCAGAAAACATTTCAACTACCAACCAGCTCATCCTCCCTGCAAAACAATCATCACTAACACAGGGCAGTAAAGAAACTACGAAAACTACGAGTTTTATACCTCAACTTCCTGACGACCAGCAAATGCAAACATCATTTTTGCCCCACATCCCTTTGTTAGCTGGGAATGTACATGATAAGCAGGAGAAATTGGTGGCGCCAGTAGTTCCCCTGACAAACTCACGATTATGCGACGTTGATGTAAAAGGTATTGCTCGCAGCATCAGCCAATCAAGTCTTGAAGCAAACTGTTATTCACCTCACGACGCCCTTGAAGGCTTAGAGACGTCAAGTGTTGTCAGCTTCGCGAGTACCGCTGCTACCCACCATGACCTCGACACTCGAATCGACATGATGCAGTCCTTGATCTCGTTGCTGGGRACCCACGACAAAGACGATATGTCAAGAACGCTGCTCGCAATGTCCAACAGCAAAGACTCGTGTGCTGCAATGAGGCAGTCAGGCTGTCTTCCTTTACTCATTGACCTGATCCATGGCCATGACAACCCAATGGCTCGACGTGACTGTAGATCTAGAGCTGGTCTTGCTCTACACAATATTGTGTACTCCAACCCTGAGGATCGCAGAGGAAGGCGGGAAATCCGTGTGTTAAGGCTTCTAGAGATTGTACGAGCCCATTGCGATGCCGTTATGTACAGTAACCTCCCACCTCATCCATGTGCAGAGAGATGGTATCCCCCTTTACGGGATTATGGCCCAGGCCCTGCTGTGGCTGCTTTGATGAAGTTGTCGTTTGAAGAGGAACACCGTAACGCCATATGTGAATTGGGAGGCTGCCAAGCAGTGGCTGAGCTCGTGGAAATTGACCATAAAGTGAACGCCGACTGCAATGATCTGTACAGTGTCAGTCTTCGCAAGTATGCCGGTATGACCCTGACGAACCTCACGTTTGGAAACACTAAAAATAAAACTATACTGTGCAAAATGGAGAAGACAGTCAAGGCAATTATAGCGCAATTGAAGACCACCAACGAAGAAGAACTTGTGCAAGTATCCGCTAGCGTCCTACGGAATCTCTCCTGGCGTGCTGACGAAGTATCTCGAGATGCTTTGCGTAAAGTGGGTGCGGTTAGAGGATTATTTGAGGCTGCACAGAAGGCCCAGAGTGAGACTGTGTTAAGGACTTTGCTCAGTGGCCTATGGAACCTGTCAGCACACTGTCCTGAAAACAAGACCGAACTGTGCAATATTCCTGGTGCCCTACGGTTCATCGTGAGAAGCCTGAGCTATTGTAGTCCAAGTGGTAACATGTCGGTCGTCGAAAGCAGTGGTGGGATACTTAGGAACTTATCATCCCATATTGCTGTACTTCCTGAATGTCGTGAGATCCTTCGCGACAACAGCTGCTTCCAAACATTACTAAGTCACCTAAGATCTTCCAGTGTTCGCGTCGTTAGCAATGCTTGTGGTGCATTGTGGAATCTGTCAGCTAGATGTATCGAAGACCAGCAGAWGCTATGGGAACTAGGAGCCGTCAGCGCACTTAAGTCATTGGTGACCTCTAAGCACAAAGCCGTCGCCACCTCCTCCGCAGCTGCACTTCGTAACCTAATGGCCGTGAAGCCATCCAGTCGCCATGGTAGCGATAGTGAGTCTGTGTCGTCATGTGCGTCAAAGCGTTATCGTCTCAGTCTTCCCTCAAGTAGTCGGCAACTAGAGACTCAATCCAAATTAAAACACTGCAAAGAAGCTACGAACGTCGAGGGGATTCCACACAAAACTCTGTCGTCAACTTCCAGGTCTCCCCAACAAACATCCCCCAGAACTAAGTCTCCAGACGTTCATCGTAAGCCAACACAAGCGTCATATTCACATATCACAGAAACGAGTAATTACCATGGAGGATCTTCATCATCAATTGATCAAGCGACCAAAGACAAAGCTTGTCACACTTTAGACACGCGGGATGTCACTATGGATACCACGGGAAGACACTCGGGGAATGTACGTAGATCAAACCACATGGATTCGAGCAGCATAGGCAGTGGGGCTTCCGAGGGAAGGCATGGTCATCTAGCACGCTGGAGTGGTAGTAACGACTCCTTAGCTCAACACCGTCGCCAGAAGAACAAGAACAATCATCAAACGAAAGCCAGTCATTCAGCAACGGAAGCTACGGGACAACATTCCCGTTCGTCAAGCGATGGTTGTGCTGTTTTACAACTTCTGACCGACAGCTACCCGCTACAAGTAACCGCAAAGACAAGCAACAGCCAACATGGCGAAAATCAACCTGTTGTGTCTCCAGCTACGGCTCGCAGGCTCAACCAATGGGCCGAGGACCAAGCTATTGAAAGTATYGAGATGTCTCAACTATATATCTGTTCACAAGCTGATCGACGTCAGGTTCACAATCCCGCACGCTTCGCTGGGAGCCGCGAGAGCCTGGGTTCTAGTTCATCCCGTCATCGAAAGAAACACACCCAGAAGTTTCGGTCGTACAGGGACTCGGAGAGTGAGCGCGAAGCAGACATAGACTCCGATGAAGAAAAGAATGTGTTTGGAGTTAAAGCGGGAGGTTTCGGCAATGCGTGGATAAAGAGAGGAGACAGCAGAGTTTCTAATACCAAGAATGTTATCAGAACTCAAGAACCAACCGCAAAATTTACACAGGACGTTGGACCAAAGCACACGTGTGTTTGTAGAGAAAAGCCAAATATCTGGATGCGACGTAGTAAGACAGATAAACGTGGATTTTGTAAGAAGTGTGTGAAGAAAGAAGTCGACGAAAAGTCACGGCCCGTCGTTAAAAGTCGACGAGATTCAAGTGATTCGCCACTTTCTAGTCCCAATGTCGTTAGGGGCTTCGCTGTAGACATTGATAGTGATCCGAGCAAACGAGGGGTTAAAGTCACATCTCTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P25054	Adenomatous polyposis coli protein OS=Homo sapiens OX=9606 GN=APC PE=1 SV=2
Q61315	Adenomatous polyposis coli protein OS=Mus musculus OX=10090 GN=Apc PE=1 SV=1
P70039	Adenomatous polyposis coli homolog OS=Xenopus laevis OX=8355 GN=apc PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005919 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF18797 all species →	APC_rep	Adenomatous polyposis coli (APC) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR026818 all species →	Family	Adenomatous polyposis coli (APC) family	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR041257 all species →	Repeat	Adenomatous polyposis coli (APC) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12607 all species →	ADENOMATOUS POLYPOSIS COLI PROTEIN FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0007026 all species →	Biological Process	negative regulation of microtubule depolymerization	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030178 all species →	Biological Process	negative regulation of Wnt signaling pathway	Interproscan
GO:0030877 all species →	Cellular Component	beta-catenin destruction complex	Interproscan
GO:0045295 all species →	Molecular Function	gamma-catenin binding	Interproscan
GO:0045595 all species →	Biological Process	regulation of cell differentiation	Interproscan
GO:0045732 all species →	Biological Process	positive regulation of protein catabolic process	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02085	APC; adenomatosis polyposis coli protein	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.