Gene detail

Detailed information of KXJ27008.1 in Exaiptasia diaphana

Genomic Location: LJWW01000024.1:668985...671145
NR annotation: XP_020899544.1, peroxisomal biogenesis factor 3 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JJK3	Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus OX=10030 GN=PEX3 PE=2 SV=1
Q9QXY9	Peroxisomal biogenesis factor 3 OS=Mus musculus OX=10090 GN=Pex3 PE=1 SV=1
P56589	Peroxisomal biogenesis factor 3 OS=Homo sapiens OX=9606 GN=PEX3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008556 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04882 all species →	Peroxin-3	Peroxin-3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006966 all species →	Family	Peroxin-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28080 all species →	PEROXISOMAL BIOGENESIS FACTOR 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0005779 all species →	Cellular Component	obsolete integral component of peroxisomal membrane	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0045046 all species →	Biological Process	protein import into peroxisome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13336	PEX3; peroxin-3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27008.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

82.4Max TPM

28.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	24.32	34.23
whole animal · symbiotic	36	33	33.38	82.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.23
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.70
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.67
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.30
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.17
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.15
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.29
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.93
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.75
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.74
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.49
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.24
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.23
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.06
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.51
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.23
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.87
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.21
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.28
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.27
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.19
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.92
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.68
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.40
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.26
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.67
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.34
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.73
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.93
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.69
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.87
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.72
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.77
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	82.40
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.58
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.96
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.32
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.92
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.27
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.07
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.05
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.42
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.35
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.04
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.97
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.84
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.83
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.43
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.55
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.48
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.45
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.34
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.06
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.94
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.35
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.98
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.89
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.81
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.80
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.26
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.95
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.28
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.14
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.81
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.24
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.77
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.