Gene detail

Detailed information of KXJ27073.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:255886...269196
NR annotation: KXJ27073.1, Exportin-6 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27073.1

ATGGCCTCAGATGATGCATCATTGCRTTCTCTTGAAKCYTTGATGAATGAGTTTTTTAGTGGGACAACTGATAATCACAGGAAACGTGAGATTGAACAAGTACTTCATAACTTTGGCCAGCAGTCTGGAGCATGGCATCACTGTGTTTACTTCATGGGGCACAGCCAAAACCACTATGTCTTAATGTATGCTGTCTCTGTATTTGAGAATCTTATCACCAAGCAATGGATTGGTGTCCAGCCTGCCGACAAGACTGAGATCCGTCATTTTTTAAACCAATATTTGCTGTCTCACCATAAAAACCTGCCTGTGTTTGTGAGGAAYAAACTGGTCAAAGTTATTGTTGATGTTGGCAGAATTGATTGGCCACATTTTTATCACAACTTCTTCTCAAACATATTGCAGCTGATTCAAGAGCCCTCCACTACTGTACTTGGTCTTGTTATGCTMCACACAACTTCAGAAGAGATGGCTTCTCCCAGGGAAGATTTGAGCATTGCAAGACGTAATGAACTTCATAGACTTCTTCTCCATCAAGTTCCTGGCATCTTAGTGTTAATAGAACAGTTATTACACAATATCCTGGACAAGCATAAACGCATTGCCTCTGCAGTCACTCCTCCACCATCTCCCACTCATGGAATTTCACCATCACATAGTCCTACACTTACAGGGAGGCTGCTCAATCAGTCACCCAAGGTTGGTCAAARTATAGGACGTCCACTACCTGCATTAGATCCTGACTCAGAAGAGACCAGCACTATGGCTTTGAAATGCTTRAATCATYTGTTTAGTTGGATTCCATTGTCYAGTACAATAACTCCACAGCTGYTGGGTACTGTGTTTTACTTTGCAGAGTTTGGTTGCTGYGCAATGTCTGGTTCTAGTGGAAGCATTGTTGGCAATCCACAGCTAGGTGTTTTGGCAATGAGTTGCATCAATGAATTGTTGTCCAAGAACTGTGTACCRGCGGAGTTTGAAGAGTTTCTTCTCAAGTTGTTTCAGCAGACKTTTCAGTTGTTRCAAAGATTAACCAAAGATTCAGGAGTGCAGTGTAGTGACCTATCAGAACTGGATGAAAGATTGAGAGTATTGGTTCCTGACCTGGACGACCAGTCAGTGGACGCAGATTCTGAGACAGAGTGGCAAATTTATCAAAGACATCTTTTGGAGATCATTGCAAAGCTAGCAGAACTTTTACCTTCTGAAGCATTTTCCATACTATTTCCATTGTTCAGTGAATACACYGATGTCTATCACAGTCTGAATCAACATATCAGCAAAACACCTCAAGGTGTCCATCTTAATATAAACAGTGAAGGCGAGTGCAGTCATCTTCACTGTACTTTGAGAGATCTTTCGACTATGGAGAGAGCATTGGGAAGATTGGTTGAACACTTTATTGGAGAAGTGAACTTTGCTAACAGGTTCAGTGATGGGGAAGCCATCTTGGAAAGGTTATGTCGTGTAGCATTGTTTAGTACACAAATGAAGCTGTATTGTATTCATTCATCAATGTCATCAATGCTGGTACAAGATTTCATTGAAGTGCATGCTCAAAGCCTGGCTGCTCTCCAAGCCTATTCTCATTGGCTAACTCAATTCTACATGGAAAGCCACCGTCAAAACCAACATCAAAACAAATTTGGTACCCTTGTGTCTACCATGRTAGATTCTCTGGTTCCTCTGCTACATAAAGATGTACCTCATCGTATAGTCCTCCCTGCCTGCCATCTTCTTAATTCCTTAACCACTACTGTAAGACCGTCMTTTCTGATAGCYTTAGACAAAGTCCAAACTCTGTTCCATACTGTCAGCGTTGGAGAACTKRCTAATCTTCCTATTGAGATTCAGACCYTGGTGTTTCGTTCACTGTCCAATGCRTTGGTACTTCCTTGGCCACTAATGTCAGATAACGAACAGATTCAGACCYTGGTGTTTCGTTCACTGTCCAATGCRTTGGTACTTCCTTGGCCACTAATGTCAGATAACGAACAGGAATGGGACATGAGATCTCAGAATCACAAGAATCTAATCAAAGGCTTGACACATCACTGCAGGGAGCTTTTAGAGGCATCAGGCTTTGCTGACARCAAGCAGCTACAAGAGAAAGCTAAAAATACTTTACAATTCACACTCCACGTACTACAGGACATCGTCGTTTCAGTAACTGATGAACAAGTCACAAAAACTAAAGTCATACTGTACCAGTCGATACAAGACATGATACATTTGACTCTGACTATCTTGAGTGTGTAYACGCATCAGCCAGATGTTGTTGATGCCATATTGGGGTTTTTCCTGGGCCTATTTGAAAGCCTTAAGATACAAGTTGGGTCAAGCTTGACGGAGGAAATTGTACTTCGACTCATGGCGGTGTTTAATCAAGAGTTGCTCAAAGAAACCCTCGTACATGAAAGTAGCACRGGGTCGAAAGCTGTGGAAAAGTTTCTTAAGATATTACAGCTTTTAATTCAGGCCCCCGCGGCCTCGTTTAAAACATTTTTACCTGGTATCATATCGCTGTGCATGGAACAGCTTTATCCTATATTAGCAGATACCCCTTCTCCAGATATCAAGACAGAGTTCTATGAACTCTTACATCAATTATTACTGCATAACTGGCGGTATTTCTTTCGTTCGTCATTACTTGCCCAAATGTCTGGCGAGGAGCATGTTGAAAACCGGCCGCAGTTCATCTCGATGCTTCAGGCCCCCGCGGCCTCGTTTAAAACATTTTTACCTGGTATCATATCGCTGTGCATGGAACAGCTTTATCCTATATTAGCAGATACCCCTTCTCCAGATATCAAGACAGAGTTCTATGAACTCTTACATCAATTATTACTGCATAACTGGCGGTATTTCTTTCGTTCGTCATTACTTGCCCAAATGTCTGGCGAGGAGCATGTTGAAAACCGGCCGCAGTTCATCTCGATGCTTCAGGCCTTCGGACAGTCGTTCCTTGAGCCAGACATTGCTATCTTCAAACAAAATATAGAAATCCTGGAAAATCTTAATTCAAAATGTAAACTTTACCAAAAGGGAATATTTCGAGACCATATGTTGTTGCATTTCGTTAACGTGTTATTTCAAGCGTTAGTATATCGTTCCCATGATCTTCTACAAGAAGAGATCACTATCACTATATACAACATGGCGTCTGTTGATTTCGATAAGTTCTTCTCAACGTTCTTGGCAGAGTTTCTTAATGGCTGCGAGAATCTAACAGAAAACCAGAAATCAGAGCTCGTGAATAATTTTAAACTTCAGGATAAGGATCTACCATCATTTACCCAGAATGTACACCGTTTTGTTGGAGATCTTCGTTATTATCGACTGTGCAACAGCAGCCTGCCACCAGGAACCGTGAAATTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96QU8	Exportin-6 OS=Homo sapiens OX=9606 GN=XPO6 PE=1 SV=1
Q924Z6	Exportin-6 OS=Mus musculus OX=10090 GN=Xpo6 PE=1 SV=2
Q53I77	Exportin-6-A OS=Xenopus laevis OX=8355 GN=xpo6-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005441 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR040016 all species →	Family	Exportin-6	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21452 all species →	EXPORTIN-6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25204	XPO6, RANBP20; exportin-6	-	Nucleocytoplasmic transport	ko03013	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27073.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

27.0Max TPM

7.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	6.32	10.22
whole animal · symbiotic	36	33	9.57	26.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.22
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.19
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.12
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.44
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.07
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.94
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.80
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.63
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.44
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.20
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.08
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.95
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.77
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.69
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.38
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.37
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.73
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.72
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.51
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.49
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.31
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.22
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.87
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.72
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.53
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.47
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.27
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.66
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.65
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.44
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.42
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.13
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.96
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.93
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.48
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.15
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.12
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.84
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.52
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.48
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.35
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.12
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.06
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.97
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.28
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.98
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.98
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.87
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.44
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.41
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.27
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.94
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.50
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.46
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.44
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.31
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.18
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.11
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.91
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.88
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.81
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.22
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.98
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.46
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.17
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.