Gene detail

Detailed information of KXJ27076.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:697814...702521
NR annotation: XP_020898945.1, proline-serine-threonine phosphatase-interacting protein 2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97814	Proline-serine-threonine phosphatase-interacting protein 1 OS=Mus musculus OX=10090 GN=Pstpip1 PE=1 SV=1
O43586	Proline-serine-threonine phosphatase-interacting protein 1 OS=Homo sapiens OX=9606 GN=PSTPIP1 PE=1 SV=1
Q99M15	Proline-serine-threonine phosphatase-interacting protein 2 OS=Mus musculus OX=10090 GN=Pstpip2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005758 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12804	PSTPIP1; proline-serine-threonine phosphatase interacting protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27076.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

128.4Max TPM

36.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	30.00	60.19
whole animal · symbiotic	36	32	42.33	128.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.19
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.00
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.75
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.80
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.63
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.32
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.07
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.98
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.59
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.49
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.13
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.42
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.28
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.71
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.65
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.04
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.32
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.78
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.69
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.02
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.09
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.08
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.07
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.93
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.67
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.65
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.56
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.53
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.38
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.94
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.82
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.99
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.31
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.45
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.09
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.30
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.50
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.49
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.35
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.51
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.92
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.71
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.11
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.48
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.30
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.12
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.11
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.04
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.12
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.99
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.78
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.81
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.10
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.86
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.77
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.66
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.10
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.60
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.34
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.09
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.04
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.90
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.19
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.59
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.47
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.