Gene detail

Detailed information of KXJ27082.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:21916...26094
NR annotation: XP_020899022.1, PRKCA-binding protein [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EP80	PRKCA-binding protein OS=Rattus norvegicus OX=10116 GN=Pick1 PE=1 SV=1
Q2T9M1	PRKCA-binding protein OS=Bos taurus OX=9913 GN=PICK1 PE=2 SV=1
Q9NRD5	PRKCA-binding protein OS=Homo sapiens OX=9606 GN=PICK1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007298 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF06456 all species →	Arfaptin	Arfaptin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR010504 all species →	Domain	Arfaptin homology (AH) domain	Interproscan
IPR030798 all species →	Family	Arfaptin family	Interproscan
IPR037959 all species →	Domain	PICK1, BAR domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12141 all species →	ARFAPTIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019904 all species →	Molecular Function	protein domain specific binding	Interproscan
GO:0002092 all species →	Biological Process	positive regulation of receptor internalization	Interproscan
GO:0005080 all species →	Molecular Function	protein kinase C binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0032588 all species →	Cellular Component	trans-Golgi network membrane	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24062	PICK1; PRKCA-binding protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27082.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

181.5Max TPM

71.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	76.01	181.54
whole animal · symbiotic	36	35	66.42	100.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	181.54
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	117.17
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	112.85
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	108.34
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	107.76
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	106.79
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.89
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.05
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	83.99
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	82.59
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	82.36
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	80.95
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.87
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.72
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	76.98
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	76.17
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.13
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.82
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.87
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.71
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.70
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.06
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.77
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.42
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.34
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.11
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.49
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.03
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.81
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.15
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.11
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.04
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.75
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.08
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	100.89
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	97.34
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.48
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	86.44
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	86.01
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	84.27
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	82.61
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	82.44
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.35
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.15
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.69
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	74.81
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.40
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.10
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.25
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.24
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.23
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.21
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.19
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.82
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.88
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.33
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.22
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.18
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.13
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.06
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.83
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.07
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.36
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.58
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.76
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.51
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.31
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.84
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.18
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.