Detailed information of KXJ27107.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:71570...105336
NR annotation: KXJ27107.1, DNA-dependent protein kinase catalytic subunit [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8QGX4DNA-dependent protein kinase catalytic subunit OS=Gallus gallus OX=9031 GN=PRKDC PE=2 SV=1
Q9DEI1DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis OX=8355 GN=prkdc PE=2 SV=1
Q8WN22DNA-dependent protein kinase catalytic subunit OS=Canis lupus familiaris OX=9615 GN=PRKDC PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001506 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20502
all species →
DNAPKcs_CC1-2DNA-dependent protein kinase catalytic subunit, CC1/2RepeatInterproscan
PF00454
all species →
PI3_PI4_kinasePhosphatidylinositol 3- and 4-kinaseFamilyInterproscan
PF20500
all species →
DNA-PKcs_NDNA-PKcs, N-terminalRepeatInterproscan
PF02259
all species →
FATFAT domainRepeatInterproscan
PF02260
all species →
FATCFATC domainFamilyInterproscan
PF08163
all species →
DNAPKcs_CC3DNA-dependent protein kinase catalytic subunit, CC3RepeatInterproscan
PF19704
all species →
DNAPKcs_CC5DNA-PKcs, CC5RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046803
all species →
DomainDNA-dependent protein kinase catalytic subunit, CC1/2Interproscan
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000403
all species →
DomainPhosphatidylinositol 3-/4-kinase, catalytic domainInterproscan
IPR037706
all species →
DomainDNA-dependent protein kinase catalytic subunit, catalytic domainInterproscan
IPR018936
all species →
Conserved_sitePhosphatidylinositol 3/4-kinase, conserved siteInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR014009
all species →
DomainPIK-related kinaseInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR050517
all species →
FamilyDNA Damage Response and Repair KinaseInterproscan
IPR012582
all species →
DomainDNA-dependent protein kinase catalytic subunit, CC3Interproscan
IPR046804
all species →
DomainDNA-PKcs, N-terminalInterproscan
IPR003152
all species →
DomainFATC domainInterproscan
IPR003151
all species →
DomainPIK-related kinase, FATInterproscan
IPR045581
all species →
DomainDNA-dependent protein kinase catalytic subunit, CC5Interproscan
IPR036940
all species →
Homologous_superfamilyPhosphatidylinositol 3-/4-kinase, catalytic domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11139
all species →
ATAXIA TELANGIECTASIA MUTATED ATM -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0004677
all species →
Molecular FunctionDNA-dependent protein kinase activityInterproscan
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0016301
all species →
Molecular Functionkinase activityInterproscan
GO:0000723
all species →
Biological Processtelomere maintenanceInterproscan
GO:0004674
all species →
Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006302
all species →
Biological Processdouble-strand break repairInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0006303
all species →
Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06642PRKDC; DNA-dependent protein kinase catalytic subunitEC:2.7.11.1
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27107.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples
65TPM > 0
2Conditions
17.6Max TPM
6.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole animal · aposymbiotic 36 35 6.28 17.56
whole animal · symbiotic 36 30 5.78 13.02

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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