Gene detail

Detailed information of KXJ27124.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:792888...799479
NR annotation: XP_020898889.1, methanethiol oxidase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q569D5	Methanethiol oxidase OS=Xenopus tropicalis OX=8364 GN=selenbp1 PE=2 SV=1
Q8VIF7	Methanethiol oxidase OS=Rattus norvegicus OX=10116 GN=Selenbp1 PE=1 SV=1
P17563	Methanethiol oxidase OS=Mus musculus OX=10090 GN=Selenbp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05694 all species →	SBP56	56kDa selenium binding protein (SBP56)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008826 all species →	Family	Selenium-binding protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23300 all species →	METHANETHIOL OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008430 all species →	Molecular Function	selenium binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17285	SELENBP1; methanethiol oxidase	EC:1.8.3.4	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27124.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

391.8Max TPM

237.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	223.09	391.76
whole animal · symbiotic	36	36	252.20	377.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	391.76
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	346.26
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	310.37
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	247.25
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	231.54
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	230.60
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	228.98
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	221.99
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	220.54
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	218.36
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	216.05
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	214.70
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	214.67
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	213.08
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	212.90
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	212.48
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	211.63
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	210.80
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	210.48
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	209.99
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	209.79
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	209.06
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	208.85
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	207.53
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	207.43
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	207.42
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	205.12
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	204.25
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	203.46
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	202.20
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	202.19
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	201.67
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	201.17
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	200.22
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	197.97
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	188.29
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	377.80
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	366.87
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	355.03
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	353.75
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	296.44
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	286.35
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	274.76
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	274.64
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	272.52
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	260.88
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	257.02
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	255.63
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	253.32
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	250.82
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	244.44
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	238.39
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	238.13
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	236.87
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	235.73
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	235.47
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	234.15
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	234.13
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	232.38
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	230.28
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	229.44
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	226.20
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	225.54
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	223.33
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	222.35
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	219.98
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	214.33
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	208.37
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	208.02
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	206.84
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	200.79
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	198.07

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.