Gene detail

Detailed information of KXJ27125.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:615426...621471
NR annotation: XP_020898876.1, 60S ribosomal protein L4 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D8E6	Large ribosomal subunit protein uL4 OS=Mus musculus OX=10090 GN=Rpl4 PE=1 SV=3
P02385	Large ribosomal subunit protein uL4B OS=Xenopus laevis OX=8355 GN=rpl4-b PE=1 SV=2
P36578	Large ribosomal subunit protein uL4 OS=Homo sapiens OX=9606 GN=RPL4 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006123 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00573 all species →	Ribosomal_L4	Ribosomal protein L4/L1 family	Family	Interproscan
PF14374 all species →	Ribos_L4_asso_C	60S ribosomal protein L4 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002136 all species →	Family	Large ribosomal subunit protein uL4	Interproscan
IPR045240 all species →	Family	Large ribosomal subunit protein uL4, eukaryotic and archaeal type	Interproscan
IPR025755 all species →	Domain	Large ribosomal subunit protein uL4, C-terminal domain	Interproscan
IPR023574 all species →	Homologous_superfamily	Large ribosomal subunit protein uL4 domain superfamily	Interproscan
IPR013000 all species →	Conserved_site	Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19431 all species →	60S RIBOSOMAL PROTEIN L4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02930	RP-L4e, RPL4; large subunit ribosomal protein L4e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27125.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

847.8Max TPM

616.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	608.08	823.13
whole animal · symbiotic	36	36	623.91	847.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	823.13
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	768.91
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	739.78
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	686.49
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	652.48
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	645.42
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	643.22
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	639.46
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	639.08
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	632.24
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	627.91
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	617.53
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	615.60
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	613.99
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	613.12
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	611.11
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	610.33
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	607.65
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	606.99
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	598.58
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	587.57
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	585.98
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	579.56
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	576.85
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	573.50
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	571.30
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	569.12
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	567.04
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	563.18
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	541.16
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	540.14
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	538.55
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	532.38
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	528.52
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	525.12
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	517.88
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	847.82
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	826.29
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	687.18
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	678.29
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	664.93
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	658.90
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	657.79
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	649.72
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	649.07
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	646.87
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	641.02
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	639.42
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	635.31
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	611.61
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	609.57
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	609.24
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	604.05
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	603.34
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	603.29
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	602.00
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	601.97
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	598.25
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	595.78
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	594.64
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	591.32
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	585.85
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	585.40
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	583.89
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	581.07
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	580.03
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	579.01
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	577.76
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	575.72
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	575.41
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	573.69
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	555.30

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.