Gene detail

Detailed information of KXJ27130.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:577486...578638
NR annotation: KXJ27130.1, hypothetical protein AC249_AIPGENE13731 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05835 all species →	Synaphin	Synaphin protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008849 all species →	Family	Synaphin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16705 all species →	COMPLEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006836 all species →	Biological Process	neurotransmitter transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15294	CPLX1_2; complexin-1/2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27130.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

151.5Max TPM

29.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	32.20	151.46
whole animal · symbiotic	36	31	27.13	41.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	151.46
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.78
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.57
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.90
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.84
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.30
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.24
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.40
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.01
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.18
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.45
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.00
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.93
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.24
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.60
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.77
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.48
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.57
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.39
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.69
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.25
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.70
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.47
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.98
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.35
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.25
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.53
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.22
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.90
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.80
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.89
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.42
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.88
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.71
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.50
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.02
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.53
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.16
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.21
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.05
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.87
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.66
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.65
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.49
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.46
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.20
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.39
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.36
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.34
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.99
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.90
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.80
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.29
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.61
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.44
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.43
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.36
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.94
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.55
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.54
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.18
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.88
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.65
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.74
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.64
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.