Gene detail

Detailed information of KXJ27133.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:854772...860477
NR annotation: XP_020898862.1, high mobility group protein 20A [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NP66	High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1
Q9DC33	High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1
Q6DIJ5	High mobility group protein 20A OS=Xenopus tropicalis OX=8364 GN=hmg20a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002175 (this species only)
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR051965 all species →	Family	Chromatin Regulation and Neuronal Gene Expression	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46040 all species →	HIGH MOBILITY GROUP PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24660	HMG20A; high mobility group protein 20A	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27133.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

74.0Max TPM

17.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	15.12	67.52
whole animal · symbiotic	36	32	19.02	74.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.52
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.82
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.24
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.70
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.51
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.20
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.17
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.65
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.58
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.41
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.35
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.17
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.02
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.97
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.92
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.62
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.13
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.00
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.66
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.66
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.19
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.17
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.98
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.70
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.25
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.10
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.87
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.86
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.80
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.73
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.39
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.86
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.11
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	74.00
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.01
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.83
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.77
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.49
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.88
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.68
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.67
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.85
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.15
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.63
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.60
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.37
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.33
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.26
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.87
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.85
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.79
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.77
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.59
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.91
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.11
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.04
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.97
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.65
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.11
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.67
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.96
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.39
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.07
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.71
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.65
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.