Gene detail

Detailed information of KXJ27134.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:251993...255768
NR annotation: XP_020898922.1, target of rapamycin complex subunit lst8 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DCJ1	Target of rapamycin complex subunit LST8 OS=Mus musculus OX=10090 GN=Mlst8 PE=1 SV=1
Q17QU5	Target of rapamycin complex subunit LST8 OS=Bos taurus OX=9913 GN=MLST8 PE=2 SV=1
Q9BVC4	Target of rapamycin complex subunit LST8 OS=Homo sapiens OX=9606 GN=MLST8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006252 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR037588 all species →	Family	Target of rapamycin complex subunit LST8	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19842 all species →	G BETA-LIKE PROTEIN GBL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031931 all species →	Cellular Component	TORC1 complex	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0032956 all species →	Biological Process	regulation of actin cytoskeleton organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08266	MLST8, GBL; target of rapamycin complex subunit LST8	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27134.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

77.2Max TPM

28.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	25.36	77.21
whole animal · symbiotic	36	32	32.47	55.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.21
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.26
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.24
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.80
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.32
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.25
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.95
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.56
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.38
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.10
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.96
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.11
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.69
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.12
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.73
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.70
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.60
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.12
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.90
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.80
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.40
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.25
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.98
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.86
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.56
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.75
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.58
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.42
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.86
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.20
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.41
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.16
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.04
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.60
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.62
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.50
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.84
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.18
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.05
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.81
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.82
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.25
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.03
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.28
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.25
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.98
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.88
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.76
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.72
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.58
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.08
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.80
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.74
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.73
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.71
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.22
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.62
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.16
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.86
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.83
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.84
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.76
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.67
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.09
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.59
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.55
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.