Gene detail

Detailed information of KXJ27137.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:45336...56746
NR annotation: XP_020899027.1, ribonuclease H2 subunit C [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2M2U4	Ribonuclease H2 subunit C OS=Bos taurus OX=9913 GN=RNASEH2C PE=2 SV=1
Q9CQ18	Ribonuclease H2 subunit C OS=Mus musculus OX=10090 GN=Rnaseh2c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08615 all species →	RNase_H2_suC	Ribonuclease H2 non-catalytic subunit (Ylr154p-like)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013924 all species →	Family	Ribonuclease H2, subunit C	Interproscan
IPR052863 all species →	Family	Ribonuclease H2 subunit C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47063 all species →	RIBONUCLEASE H2 SUBUNIT C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0032299 all species →	Cellular Component	ribonuclease H2 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10745	RNASEH2C; ribonuclease H2 subunit C	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27137.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

59TPM > 0

2Conditions

17.6Max TPM

7.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	29	6.85	13.93
whole animal · symbiotic	36	30	8.64	17.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.93
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.23
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.33
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.73
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.38
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.12
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.99
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.75
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.57
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.47
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.43
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.15
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.78
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.65
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.57
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.47
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.36
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.84
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.19
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.07
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.92
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.75
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.51
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.44
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.40
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.16
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.62
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.54
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.35
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.61
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.30
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.27
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.98
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.88
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.52
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.04
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.85
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.46
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.46
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.98
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.87
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.84
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.76
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.72
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.43
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.95
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.14
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.08
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.91
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.86
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.63
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.30
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.22
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.04
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.03
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.33
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.08
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.90
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.56
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.