Gene detail

Detailed information of KXJ27153.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:2619...7026
NR annotation: XP_020898948.1, beta-1,3-N-acetylglucosaminyltransferase radical fringe [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JHF2	Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Danio rerio OX=7955 GN=lfng PE=2 SV=2
Q6KFX9	Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Danio rerio OX=7955 GN=rfng PE=2 SV=1
Q2KJ92	Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Bos taurus OX=9913 GN=LFNG PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02434 all species →	Fringe	Fringe-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003378 all species →	Domain	Fringe-like, glycosyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10811 all species →	FRINGE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0008593 all species →	Biological Process	regulation of Notch signaling pathway	Interproscan
GO:0033829 all species →	Molecular Function	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05948	FNG; fringe	EC:2.4.1.222	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27153.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

64TPM > 0

2Conditions

55.9Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	12.69	25.46
whole animal · symbiotic	36	32	14.45	55.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.46
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.72
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.87
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.31
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.50
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.40
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.73
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.81
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.60
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.53
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.14
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.76
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.97
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.27
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.13
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.85
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.71
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.69
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.61
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.28
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.15
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.43
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.32
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.27
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.18
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.02
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.79
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.60
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.37
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.25
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.32
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.63
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.92
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.19
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.65
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.47
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.31
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.18
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.01
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.00
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.98
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.68
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.36
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.18
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.93
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.85
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.60
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.40
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.59
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.42
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.24
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.16
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.68
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.61
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.17
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.85
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.81
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.80
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.21
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.09
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.02
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.73
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.13
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.05
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.