Gene detail

Detailed information of KXJ27165.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:547956...558468
NR annotation: KXJ27165.1, Lysosomal alpha-glucosidase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9MYM4	Lysosomal alpha-glucosidase OS=Bos taurus OX=9913 GN=GAA PE=2 SV=1
Q6P7A9	Lysosomal alpha-glucosidase OS=Rattus norvegicus OX=10116 GN=Gaa PE=2 SV=1
P10253	Lysosomal alpha-glucosidase OS=Homo sapiens OX=9606 GN=GAA PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001411 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01055 all species →	Glyco_hydro_31_2nd	Glycosyl hydrolases family 31 TIM-barrel domain	Domain	Interproscan
PF21365 all species →	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030458 all species →	Active_site	Glycosyl hydrolases family 31, active site	Interproscan
IPR000322 all species →	Domain	Glycoside hydrolase family 31, TIM barrel domain	Interproscan
IPR048395 all species →	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22762 all species →	ALPHA-GLUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12316	GAA; lysosomal alpha-glucosidase	EC:3.2.1.20	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27165.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

177.5Max TPM

71.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	64.24	177.46
whole animal · symbiotic	36	34	78.32	122.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	177.46
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	86.86
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	80.55
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.30
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.46
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.40
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.35
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.82
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.10
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.26
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.51
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.21
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.05
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.40
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.34
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.32
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.85
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.88
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.67
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.53
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.78
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.58
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.12
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.00
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.65
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.19
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.80
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.75
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.95
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.42
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.78
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.36
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.21
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.03
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.03
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.52
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	122.23
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	120.39
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	108.19
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	100.09
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	97.89
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	97.88
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	97.16
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.20
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.98
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	92.20
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.75
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.10
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.27
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.08
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	87.84
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	86.50
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	82.40
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.94
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.78
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	77.38
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.89
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.91
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.79
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.65
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.49
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.34
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	68.83
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	68.27
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.91
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.87
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	64.50
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.76
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.57
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.52
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.