Gene detail

Detailed information of KXJ27188.1 in Exaiptasia diaphana

Genomic Location: LJWW01000022.1:827185...841391
NR annotation: XP_020898399.1, pleckstrin homology domain-containing family G member 5 isoform X8 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27188.1

ATGCCTGAGTTAGGTGGAAACGATGTGGACAACGAGAAGACAGATGAGTCTCTTCGTTTGTGTGAAGGAAAACTGTGTAGCTCCAGTGTTCAATGTATAAAGAAATCTACTGCAGTGAAGATTTGTCATCATGAAGTATGCCAAGACTATAACCACGGCATTCCACTGGCACTMTGCCTGAAATGCGATGAAGTCCACCATTTAGGCGTCAACGCAAAACATGCAAGATTTGAGATCAATAAACCTCGAATGAAACTGACAAGGAGCAACTCAACTCATTCCAATCAGTCTGATCATGACTCTGGCGCAGAAGAAGACATCACCGACGGACCAGTCAAAGTGGAAAAGAAAACCAGAGGTTATTCTACAGGAAAGAGAATATTCAAACTGACAGCAAATACAAAACGGAAACCAAGGAGACATAATACAGATGATCCTGGTAGAGATTTCTTTACTGTTAAGTTTCATGGTGAAAATGATGACGACATCAACATAGAAATAGTTCCTGCATTAAAAGGGAAATCCTTGAAGGATTCATTAGAACCTTTGTTCTCAGAGAGAGATATAAGTTTTCTAAGTCATTCAGTATTCCTTGATGCTTCTAARACTCCATTACCGCTTGCATTTGATACTTTCCCAATGGGTGGAAACACACTACATGTTAGAGCCAATGGTGTTGTAAAGGTAGACCAAAGGGTCATTGAAATGGTGAATAGCGTAGAAGACTGTAAACCCCAAGATGAATACATCCAGAAACCAAGAAGCAAGTCTGTCATGGATAACTCCTCCCTTAGTCGTGCAAAAGGAAACATGAAGAAGCTGGAACAAGATGAAAGAGATCGACAAACAGATGAACTCCTGAAGATGAGCCAAAGAGGTAAGAAGAACATAATGAGTTTCTTTGGTGAAGACAGTCCTAATGCAACCTTCACAGGATCCAATCCAGCAATCCAATCAGGAACACAATCTGGTACTGGAACTCTTCATAGACCCAAATCAACTAGTAAGCTCACAGGGCTGTTCATAAACCAGCCCAAACCATCAAAGCAAGAGATTTCTAATAGAGGATCAACACTTAGAGATTTCTTGGCATTGTACACTGTGTATGGACTTCCAGACCTTAACCAAGTAGACACAAGTATTAAAGATGAACCTCATGAAGAGGAACTTAAACTGGAGGAGTCTTGGATGGATGTTGTGGACCAACAATATATTGATCAAATGTCCAAAAAAGAGAAAGACCAACAAGAAGCAATCTGGGAATTATTGACAACTGAAGTTGCTTACATACAGAAACTTAGTATTGTTAAAAAGTTATTTATCCTTTGCTTGAGAAATCTAAAAAACGAAGGTTTCTTGCAAGATACTGAAATACCCAAGTTGTTTAGTAATATAGAAGATATTTATGAGTTGAACTTGTCCTTTTGGTTGGATTGTCTTAGTGATGTAGTGAAACAGTCAAGGAAAACAGGAAATCCATTGGACCCTATGGACATGAGTGAAAGCTTCCCAATGTTTGATAAAAGATTTGAGCCATATATTACATACTGTACAGAGGAATCATACTGTCTGAAATACTTCAAAAGAAACTTTGCRGAAGATGAAGACTTCAAGACCTATATCACTTGGTGTGAAGAACATCGCCTGTGCACAAACAGACTKAAGCTATCAGATTATCTTGTGAAACCAATGCAACGATTGACCAAATACCCTTTATTACTGAAAGCCATACAGAAAAAGACTCTATCAGAACAGCCAAAGAAAAGCGTTGAGGGAATGATTAGCACAGTAGAGTCACTGCTAAGCAAGGTCAATGCAGCCATGAGAGTTTTGTACGAGAAGAACAAACTGATGTCAATATCGAAACGAATAACAAACAACTACAACGTTGTAGAGGCTGTTAACGATGAAATGGAGCGACTGTTAACCAACTACAGCTCTTTTGATTTGATGGAGCTCATGCCTGGCTTGGACCAGCATCGTTGTGTTATTAACGAAGGTCCTTTGAGGCTTGTAGAAAAACAGGGCAAGATGGATGTTCACGTCTTCCTCTTTACAGATCTTCTCCTCTTGACAAAAGCAAAGAAGGGCGACAAATATAGAGTCTTGAAACCGCCACTAAAAGTGGACAAACTCTACGTACATCCATCCAAAGACCAAGGGATGTTTCTGTTGATTTATGTTAACGAATACAACACAGCAGTTCAAGCTTTTGCATTACAAGGGACAACTACTGAAAATGCTAATTATTGGATGGAAGCTATTCGAAAAGCACAGAAACTATTAATGGTGGCWCAACTCGGACAAGGTGGAGGTCACATGGGACGAGTCGAGAGCGATTCTAGTGAAGCTCTCATTAGTCCGTCTGCTCACATTTCAAATGTTGCATCAAAACGAAGACCCTCTACTGTGTCAATTGAATCTTTCGATTCTGATGATGAAATGGGTTTGAATGAACCATATCAGGCTCCGAATTTGGCAAGGTTTTCATCGGATCAAGCTCTTAATATTGGTGCAGATAATGAAGATGAAAAGGACATTGATACTGCCAAGGAGGAAAATATCACAGTTTTACAGAAMGAGAATTGTACTAACCAAGAATCATTCAGTGATCTATCAAGTGCCCAAGGACAAACACCAATCGATACAACTTCGGAAGAAAATTTTCAAAAAATACCTCCAGTCCATCCGGAACTTCACCGTCTGCGCAGTGAATCTTCAGCAAAAGTTTCGCGATCTTCMTCAGCGCCYCAAAAAGATCGGCCAAAAGTCGAGGCAGTGTCGTTGTCTCGATCATGTTCCGAACCAACTGAACCAAAGAGATTTTTACGGAAAACTTCGAAGGGAGAAATAATTACCGAYGGACTTCCGCTAGCGAAGGATTACCGAACKTCTCTTACATCATCTTCGTTTTCGGAGTCGGAAGTAAGCTCAACGCCTTCGCTTCAGAATTCTTTAGAACTGAGTGCGTCTCTTTCTTTAGATGACAATGCATTTGATTCCGCGGCATCTCCCAAACTATCCGAATCGTTTGCTAGTGCAGCTAGTGACTATAATGATGTTTGRTCTCCGATATCGGACGTACCATCGTCATTTGAGGCAAAACTAGATGATTACCATGACGARGATGGGAACGCACACTCCGGTCGACCTGTTACGCGCTCATCCTCTGCGCCAGTCCCCTTAAAGGAACTCAGGCCCCACTCTGTGAGTAGTGWCCCTGATGCGGATGAAGGACCTGGTGTTGAAGATGATAAAGCTGCTACATATCCTCGTCGTGGGAATCGAAGTCGAGCAAGTCCAGGTCTCAAAGCRTTGCAATCTTTGTCAGAAACTCTGGAAATCTCTTTAAAACAGCAACCTTCAAAACAAACTCCTCAAATTAAATCTCCTTTGATTGCACAACAGAAGTTACAGTCCGCCATTAGCAGCGCGGCGACTTCTGAYCCACCCCGCAAAAAGACGTCATTGCCGAGGCGATCGTCACCGATCTTGACCCGACGACCCGACAATCTAATGCGATCAAAGTCGTATTCGGGACTCGATAAAGTCAACATCACTTCACCTGATAAAGTAAAAGCATTTTTAACGCTTTCCGATGGTAATCCCACAGAATCTAAAGACTCTGACGATGATTTAGACTCAAGCAGTTCAATTAAATCGCGAACACTTCCACGTAGTAACACCGAATCGCGTGTTCCTTTAAAYCCAGATAAACAYCACTATAAAGAACTTGAATACACATCAAAACAAAAAAATGAGAAACAGGTACTCGAAGTATCGAGTAAAGGCTCGACTACGCCTCGTCTTCGTAAAAAAAGCATGTCATTATCGGATTTATTGAGCATCGGTCGAGATCTCACGAGCGGCCGAAGTAAAAACAATGACTCGAACAATTCTTCGGAAGTAAGTCGGAAGGATTCTCGGCACAAATCGGACTCGACAGACGACCGAAGTGAACCCGTTCAGCGAAAGCATTCAAGGTTCAGATTAGGACGTAGTAAGAGTCGCAGTGATCGGGAAATGAAGGATGGYATTGCTTCAGGACCAAATATCGATAAAAGGAAAGCAACAAAGCTGTTTTTGACGGAATCCTTGATGCTAGAAACTTCGGTCGTCCGTGACAAATCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66T02	Pleckstrin homology domain-containing family G member 5 OS=Mus musculus OX=10090 GN=Plekhg5 PE=1 SV=1
Q6RFZ7	Pleckstrin homology domain-containing family G member 5 OS=Rattus norvegicus OX=10116 GN=Plekhg5 PE=1 SV=1
O94827	Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens OX=9606 GN=PLEKHG5 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001539 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040181 all species →	Family	Pleckstrin homology domain-containing family G member 5/7	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13217 all species →	PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0043542 all species →	Biological Process	endothelial cell migration	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19464	PLEKHG5; pleckstrin homology domain-containing family G member 5	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27188.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

97.4Max TPM

45.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	46.32	97.44
whole animal · symbiotic	36	35	45.28	73.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	97.44
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	85.14
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.17
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.60
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.42
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.90
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.44
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.78
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.48
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.42
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.86
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.64
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.45
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.89
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.95
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.57
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.38
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.35
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.24
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.91
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.62
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.67
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.73
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.09
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.34
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.74
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.05
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.97
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.59
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.69
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.38
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.08
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.42
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.26
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.74
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.46
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.81
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.50
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	64.82
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	64.33
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	64.08
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.84
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.07
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.32
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.23
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.52
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.33
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.56
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.15
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.42
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.77
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.16
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.63
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.05
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.54
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.94
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.50
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.06
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.51
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.49
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.88
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.57
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.42
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.96
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.44
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.18
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.97
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.15
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.87
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.61
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.