Gene detail

Detailed information of KXJ27196.1 in Exaiptasia diaphana

Genomic Location: LJWW01000022.1:765737...779454
NR annotation: KXJ27196.1, Hemicentin-1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27196.1

ATGGTTCTTTCCAAAACAATNATTAGTATTTTATTGCTGCTCTTGACTGGATTCATTGTCATCTGCAGAGTCAAAAGCTTCAAAACAGACGGCGATAACGCCGCCGAGGCCCCAGCTGACTATGCTGCAGTCGACCAGAAAATTGTCTTTGAGGAAAATAAGAACTCTATACCAGTGAACATTGTCATCGTGGACGACGCTAAACAAGAATCTACTGAGAACTTTGGACTGATGTTGACTTGTGAAAAACCCGACTGTGTCAAAGTCAACAAAGCCAACGTGGAAATCACGGATGACGATATCGACGGCCAGTGGGGCGAATGGGGACAATACGGGGATTGCTCAAAGTCCTGTGGCACAGGAAGTCAATCCAGATCTCGCAGCTGCAACAACCCAGCACCACAAGGAGAAGGAGCTTATTGTGTGGGCACCAACACTTCTTCGCAAGATTGCAACACACACCATTGTCCAGGAAAAGTTGGATGGGACCAGATCACTGCCGAGTTGGACGAGTGCGAAGGAACTGTAACCGTCAAAATTGTCAGAAGCGAAACAACCAACATTCCTGCTTCGATCAAAGTTGACCTGAACCCAGGCTCAGCTACCGCCGATGATTACTATCCCCTCGATCAACCGACCATTCAATTTGACAAGGATGCAACTGAAGTAACAGTCACATTCAAAGCAAAGTCTGACAATACCATTGAACCCGACGAAACCTTCACAGCGGTRATCACTRCTACTAATGCTGCTGACCTTACTGTCGRCGACGGAAAAGGAACATGCACTCTTACTATCAAGGATCAGTCAGCCATCTTCACGTTCCAGAAACAGAAGTACAGCTTTTCAGAAAACGATGGAACCGTTAATGTTGTTGTKAAGAGATCAGGAAATAGCAACGGGAAGAATGTCTGCAGTCTTAAGAGCTCTGATGGTACCGCTGAGGCAGGCAAAGACTATAAAGCGATTGACGTCCCAGTTGTCTTCGAGTCCCGTGATAGTTCCCAGTCTGTCTCTGTCGAAATTATTGATGATACTGAAGATGAAAATGATAACGAGTCATTCAAGCTTGTTTTGGAATGTGAGAARCCAAAATGCGTCAGGKCCTSTGACGTTGAAGTGGAGATAAAGGACGATGACGGATACTTTGCCCATTGTAAGGACTATTACGACTGTAAGAAGTGTGACGATATCAAGAGATCTGGTCAATGCAGTGCCAACATTGCATATTGTGCCATGACCTGCAACCCAAACTGCGCATTTAACTATGTTGACGATCCGAATGAGAATTGTGCTGAAATAAAATCTAAGGGCAAGTGTTTCGAAGCTAAGGGCTTTTATTTGCCGGTGTGGGCTACAGTTTGTCAAAAGTCTTGCTGTGTTCCCGACAAACCGCCACACTGGAGCGAGTGGTCTAGTTGGACCCCTTGCTCTAAGTCTTGTAAATACGGCTTAACTTCGAGGTCAAGGAAGTGCCAAGGAGAGGCATTTGGACAAACATGCAAGGGATCGCCGCATGAGKTCAAGAAGTGTAACGAAAATGTCCCATGTGAAGGTTTAATAGGCTGGGATGATTCCTCTGTGGACATTGACGAGTGTGCTGGTACGGTGTCTGTCAAAATCACAAGAACACGCGTCATCAACTGTGCAGCATCAATCACTGTGAATACTAATGACGGTTCTGCAACACAGCCTGCTGATTACAATCAAATCAAAGATCTCGTTATAACATTCGATAAAAACGAGACAGTAAAATCAGTGACTTTTAAAATAAACGGTGATACTGATATTGAAGGACCAGAATCCTTCAGTGCCGTCATTACCGCTGACCCCAAGAAGCTTGAAATCACAGAGTCGAAATGCACAGTGAACATTAAAGATCAATCAGCTAAGATTGGTTTTAAGCCAGACAGTTATACAGTGTCTGAAAATGACAAAAAGGTCAAGGTTACTGTGCACAGATTTGGAAATAAGAATGGAAAGAACACTTGCAGTGTCTCAAGTGCAGATGTGACGGCAAAATCACCCGATGACTACAAAGGAATCACAAAAGTTCCAGTTGTCTTCAATGCCGGAGATGACACAAAAGAAATCGAAATTCCAATTGAAGACGACAATATTGAGGAAAAAGACGAAGCTTTCAAATTGTCCTTGGCCTGTGAAGAGTCTCCTTGCACTAAAGTTGTACCAGACGAGGCACTGGTCACCATCAAAAGTGATGACGTCGACGGCCAGTGGGGCGAATGGGGACAATACGGGGATTGCTCAAAGTCCTGTGGCACAGGAAGTCAATCCAGATCTCGCAGCTGCAACAACCCAGCACCACAAGGAGAAGGAGCTTATTGTGTGGGCACCAACACTTCTTCGCAAGATTGCAACACACACCATTGTCCAGCTAAGGTTGGCCTGAAACCAGCATATCAAACCGTTCCTGAAAATGTAGAAAAAGTGAAAGTGAACGTGTTCAGAATTGGAAATTCTGAGGGTACCAACCGTGTTAACATTTCAACAAAGCCCAAATCGGCTACATCCCCGGATGATTTCGAAAGCATTCCAGTAAAAGAGCTTACCTTTAATCCTGACGAGTCAAACAAGATGGTGGAGATACAAATCAAAAACGACTGTTTACCTGAAAATGATGAAGAATTTGAAGTAATTCTGACGAGCGACGACTCTGGAGTAGTGTCTGTGAGCCCTYACGCAGCCATCYTCAAAATCCTRGARGACGATGTTGTACTTGGCCTAGACCCGACAGCAAAATCTGTGCGCGAAAGTGACGGAAGTGTCAAGTTGACAGTATTTAGGAAGGGTCACATCAGAGGCAAATCCACTGCCATTATAAATACCTGCGAAACTGGGTCTGCAACGGCTTCTGAAGACTTTGAACCTTTAACCAACTTCAAGGTTGAATTCGCTGAGAAAGAAAAAGAAAAGACGTTTGACATCAAGATTATTAATGATAAAAAGTGTGAACCGGACGAGTCGTTCTGCGTTAAGCTCACAAGCAATGACAAGAACATGTGCAATATCTCACCCAAGAAGGCTGAAATTACCATCGTTGAAGATGATGTTAAACTTAGTCTTCATCCCGGAAAGATCACAGTTCTGGAGAGTAAGAAGTTTGTTAAACTAACTGTAAAGAGATTTGGAAATCTGAAGGGTACAACTAATGCTGTTATCAATACAAAAGACAACACCGCATTGGCCGGCAAAGACTACAAACCACGTACAGGGTTCCAAATTGAATTCAAGCCCCAAGAACCAGTAAAACGTTTCAAAGTATTCCTTATGGACGATAACATCCCAGAAGACACCGAAACCTTTGACGTCAAGCTCACCAGTCCTGATAAAGATGTCACCGTCATCAACCCCGATTCATCTGTCGTTGAGATTTTAGATCATGATGCTAAGATTGGTTTCAAACACGTGAAATACTACTTTATGGAGACCGCGGGTGTAGTCACGGTTGTTCTTGTCAGAACATGCAACGACTTGGCATTGAAAATCAGTCATTCCGTGACTGTGACAAGTTTTGATGATTCTGCKAAGCAACCCGACGATTACAAACAAGTAGACCAAACAGTAGTATTCAAAGCCGGACAAAAGACAGCAGAAGTCAAAATCGAAATTAAAAACGACAATATACAAGAAGGGAAGGAAACATTCAAACTCAAACTTACAACTACAGATATCAGGGTTCAGCTCGAACCACAAACGTCAACAGTCTGCATCAAGGATAACGACGTTGATGGGAAGTGGGGCCCGTGGTCTAACTTTAGTCCATGTGGAAAGACATGCGGTACATCCACTAAATACAGAACGAGAAAATGTGACGATCCACCACAAGCTGGGGAAGGAAAACACTGCGAAGGAAAAGATAGACAAGAAAAATCATGCTACTTGCAAGAATACTGCAGAGTCAATGGCGGATTCAGTGAATGGTCGAAATGGTCGGAGTGTTCCATAAGCTGTGGGAATGGAACAACGGTGAGGTCACGAAAATGCGACAACCCAGCCCCCAAATATGGCGGTCTGCCATGCCTTGGCTCCAGTTATGAAGTGAAGACATGTGTAGTAAATGCGTGCTGCAAAGTCGACGGTCAATGGGGGAGCTGGTCGAAATGGTCAGCATGCAGCAAAACATGTGTTAACGACCTAAAAGAAGGAGGCGGAGAAAGGACAAGAACTCGTGAATGCAATTACCCCAAGCCATCCTGTGGCGGAGCCGATTGTCAACCGGGAGCTTACAGCAAAGTAGGAGCGACTGAAAAAACATCTTGTAGCGTTGTACTGTGCAGCAATGCATACGTGGTCGCCCCAATGAACAGTGGATATGGAAGTCAACCGACCACCAAACCTACAACTGCCGCTCCTACCACTCAGCCAGCATACAACCCCTACGGGTGGTGGCCCCCCGCGGCATACGATGAAAATGAAAATGAGGAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q28178	Thrombospondin-1 OS=Bos taurus OX=9913 GN=THBS1 PE=2 SV=2
P35441	Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF03160 all species →	Calx-beta	Calx-beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR038081 all species →	Homologous_superfamily	CalX-like domain superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR051171 all species →	Family	Calcium/Cation Antiporter	Interproscan
IPR003644 all species →	Domain	Na-Ca exchanger/integrin-beta4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11878 all species →	SODIUM/CALCIUM EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015491 all species →	Molecular Function	obsolete cation:cation antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0007154 all species →	Biological Process	cell communication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ27196.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27196.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

630.7Max TPM

271.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	283.76	630.75
whole animal · symbiotic	36	36	259.09	422.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	630.75
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	572.06
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	540.01
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	539.47
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	537.45
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	482.09
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	459.46
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	456.87
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	455.62
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	453.81
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	452.28
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	444.67
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	274.93
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	268.66
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	262.15
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	252.13
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	233.67
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	231.54
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	192.35
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.03
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.01
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	167.42
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	166.46
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	166.36
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	165.56
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	161.98
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	161.38
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	155.09
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	153.95
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	152.15
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	119.68
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	117.30
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	116.31
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	113.33
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	111.67
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	110.61
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	422.78
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	420.18
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	415.34
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	415.29
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	409.12
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	408.90
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	405.54
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	404.24
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	402.12
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	399.57
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	398.40
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	393.67
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	360.26
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	338.26
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	336.88
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	330.39
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	327.58
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	321.42
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	182.03
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	172.80
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	172.64
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	172.18
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	171.99
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	167.98
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	156.46
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	138.89
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	135.96
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	132.98
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	132.17
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	130.15
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.67
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	94.91
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	92.91
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	92.58
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	91.47
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	83.43

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.