Gene detail

Detailed information of KXJ27212.1 in Exaiptasia diaphana

Genomic Location: LJWW01000022.1:866653...873877
NR annotation: KXJ27212.1, Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21913	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhb PE=2 SV=2
Q9YHT2	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus OX=9031 GN=SDHB PE=1 SV=1
Q9CQA3	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mus musculus OX=10090 GN=Sdhb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007166 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13183 all species →	Fer4_8	4Fe-4S dicluster domain	Domain	Interproscan
PF13085 all species →	Fer2_3	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR004489 all species →	Family	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	Interproscan
IPR025192 all species →	Domain	Succinate dehydogenase/fumarate reductase N-terminal	Interproscan
IPR050573 all species →	Family	Succinate Dehydrogenase/Fumarate Reductase Iron-Sulfur	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR006058 all species →	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11921 all species →	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0009060 all species →	Biological Process	aerobic respiration	Interproscan
GO:0022904 all species →	Biological Process	respiratory electron transport chain	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ27212.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27212.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

71TPM > 0

2Conditions

226.3Max TPM

140.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	135.60	195.25
whole animal · symbiotic	36	36	144.69	226.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	195.25
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	172.69
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	172.41
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	171.13
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	170.68
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	169.19
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.50
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	164.60
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	161.28
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	161.11
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	160.47
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	160.24
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	158.58
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	157.71
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	157.20
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	156.62
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	155.84
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	155.40
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	155.08
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	154.43
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	149.97
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	149.02
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	145.55
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	113.71
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	108.57
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.76
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.19
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.15
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	101.66
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	100.05
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	98.09
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	93.34
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	90.64
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	87.34
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.25
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	226.33
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	225.19
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	194.25
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	173.02
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	172.52
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	170.56
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	167.95
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	167.89
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	163.61
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	162.99
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	162.74
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	161.10
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	160.92
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	158.79
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	158.71
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	153.70
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	148.00
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	147.68
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	133.52
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	132.07
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.88
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.10
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	130.15
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	129.75
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.91
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.39
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.36
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	127.80
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	127.61
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	126.14
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	98.97
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	98.25
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	97.63
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.60
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.31
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	91.56

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.