Gene detail

Detailed information of KXJ27222.1 in Exaiptasia diaphana

Genomic Location: LJWW01000022.1:556297...575163
NR annotation: KXJ27222.1, Tyrosine-protein kinase CSK [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P32577	Tyrosine-protein kinase CSK OS=Rattus norvegicus OX=10116 GN=Csk PE=1 SV=1
P41241	Tyrosine-protein kinase CSK OS=Mus musculus OX=10090 GN=Csk PE=1 SV=2
P41240	Tyrosine-protein kinase CSK OS=Homo sapiens OX=9606 GN=CSK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000422 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR035027 all species →	Domain	CSK-like, SH2 domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR050198 all species →	Family	Non-receptor tyrosine kinases involved in cell signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24418 all species →	TYROSINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004715 all species →	Molecular Function	non-membrane spanning protein tyrosine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05728	CSK; c-src tyrosine kinase	EC:2.7.10.2	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27222.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

69TPM > 0

2Conditions

51.7Max TPM

33.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	30.69	51.71
whole animal · symbiotic	36	35	36.32	48.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.71
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.58
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.26
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.97
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.26
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.18
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.08
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.61
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.68
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.33
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.01
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.77
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.56
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.57
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.81
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.01
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.78
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.63
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.53
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.37
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.99
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.92
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.77
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.13
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.65
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.12
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.90
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.76
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.69
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.58
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.83
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.58
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.90
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.16
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.94
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.70
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.65
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.32
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.11
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.11
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.73
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.98
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.42
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.29
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.27
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.17
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.64
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.20
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.90
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.90
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.87
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.40
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.98
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.91
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.80
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.74
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.60
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.37
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.31
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.94
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.80
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.33
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.98
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.90
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.15
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.60
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.79
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.51
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.13
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.