Gene detail

Detailed information of KXJ27244.1 in Exaiptasia diaphana

Genomic Location: LJWW01000022.1:921762...924977
NR annotation: XP_020898481.1, uncharacterized protein LOC110237226 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01223 all species →	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001604 all species →	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR044929 all species →	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan
IPR040255 all species →	Family	Non-specific endonuclease	Interproscan
IPR044925 all species →	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR020821 all species →	Domain	Extracellular Endonuclease, subunit A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13966 all species →	ENDONUCLEASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000014 all species →	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01173	ENDOG; endonuclease G, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27244.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

33.3Max TPM

14.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	11.00	18.90
whole animal · symbiotic	36	31	18.31	33.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.90
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.30
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.28
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.24
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.54
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.98
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.81
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.77
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.75
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.53
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.32
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.10
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.46
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.05
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.28
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.64
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.38
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.33
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.25
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.09
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.05
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.91
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.75
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.67
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.49
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.26
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.14
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.71
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.25
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.04
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.82
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.04
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.27
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.50
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.96
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.06
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.73
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.76
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.61
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.51
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.33
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.70
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.70
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.56
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.53
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.23
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.22
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.92
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.25
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.14
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.02
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.90
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.58
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.29
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.15
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.10
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.99
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.79
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.65
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.17
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.06
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.98
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.56
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.