Gene detail

Detailed information of KXJ27271.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:962421...964989
NR annotation: XP_028514148.1, cilia- and flagella-associated protein 20 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6B857	Cilia- and flagella-associated protein 20 OS=Bos taurus OX=9913 GN=CFAP20 PE=1 SV=1
Q8BTU1	Cilia- and flagella-associated protein 20 OS=Mus musculus OX=10090 GN=Cfap20 PE=1 SV=1
Q6PBJ2	Cilia- and flagella-associated protein 20 OS=Danio rerio OX=7955 GN=cfap20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05018 all species →	CFA20_dom	CFA20 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040441 all species →	Family	Cilia- and flagella-associated protein 20/CFAP20DC	Interproscan
IPR007714 all species →	Domain	CFA20 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12458 all species →	ORF PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0060296 all species →	Biological Process	regulation of cilium beat frequency involved in ciliary motility	Interproscan
GO:2000147 all species →	Biological Process	positive regulation of cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25470	CFAP20; cilia- and flagella-associated protein 20	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27271.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

67TPM > 0

2Conditions

135.3Max TPM

66.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	54.25	112.16
whole animal · symbiotic	36	34	78.53	135.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	112.16
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.87
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.00
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.87
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.13
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.45
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.16
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.87
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.36
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.16
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.65
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.92
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.75
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.94
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.42
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.14
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.07
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.60
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.58
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.30
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.24
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.11
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.00
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.64
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.27
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.16
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.69
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.03
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.78
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.13
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.01
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.65
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	135.35
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	108.55
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	98.56
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	97.66
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.24
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.21
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	92.42
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.04
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.01
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.26
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.83
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.54
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.48
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	84.79
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	84.40
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	84.39
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	83.60
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	82.61
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.93
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.41
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.31
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.42
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	77.27
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	77.04
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	74.05
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.32
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.53
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.44
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.02
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.09
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.93
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.75
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.46
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.14
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.