Gene detail

Detailed information of KXJ27289.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:98951...101776
NR annotation: XP_020897739.1, proteasome subunit alpha type-7 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9PVQ1	Proteasome subunit alpha type-7-B OS=Xenopus laevis OX=8355 GN=psma7-b PE=2 SV=1
Q9PVY6	Proteasome subunit alpha type-7-A OS=Xenopus laevis OX=8355 GN=psma7-a PE=2 SV=1
Q3ZBG0	Proteasome subunit alpha type-7 OS=Bos taurus OX=9913 GN=PSMA7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007993 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00227 all species →	Proteasome	Proteasome subunit	Domain	Interproscan
PF10584 all species →	Proteasome_A_N	Proteasome subunit A N-terminal signature	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR023332 all species →	Family	Proteasome alpha-type subunit	Interproscan
IPR001353 all species →	Family	Proteasome, subunit alpha/beta	Interproscan
IPR050115 all species →	Family	Proteasome subunit alpha	Interproscan
IPR000426 all species →	Domain	Proteasome alpha-subunit, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11599 all species →	PROTEASOME SUBUNIT ALPHA/BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005839 all species →	Cellular Component	proteasome core complex	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010498 all species →	Biological Process	proteasomal protein catabolic process	Interproscan
GO:0019773 all species →	Cellular Component	proteasome core complex, alpha-subunit complex	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02731	PSMA7; 20S proteasome subunit alpha 4	EC:3.4.25.1	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27289.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

67TPM > 0

2Conditions

125.2Max TPM

65.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	62.58	125.23
whole animal · symbiotic	36	33	67.54	93.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	125.23
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	81.19
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	78.90
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	78.11
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.68
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.64
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.53
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.05
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.71
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.54
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.88
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.65
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.71
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.54
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.66
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.11
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.54
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.09
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.53
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.24
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.66
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.11
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.93
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.38
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.42
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.00
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.79
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.68
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.39
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.14
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.35
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.43
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.90
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.17
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.21
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	92.20
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.73
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.21
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.66
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.91
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.42
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.42
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	77.76
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	77.57
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.60
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.33
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	74.84
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.31
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.43
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.28
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.12
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.99
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.53
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	71.45
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.67
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.54
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	68.63
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	68.17
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	64.22
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.42
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.91
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.81
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.39
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.13
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.14
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.35
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.