Gene detail

Detailed information of KXJ27351.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:1012297...1017641
NR annotation: XP_020897845.1, uncharacterized protein LOC110236647 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11183	Glycine cleavage system H protein, mitochondrial OS=Gallus gallus OX=9031 GN=GCSH PE=1 SV=2
Q91WK5	Glycine cleavage system H protein, mitochondrial OS=Mus musculus OX=10090 GN=Gcsh PE=1 SV=2
Q5I0P2	Glycine cleavage system H protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Gcsh PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01597 all species →	GCV_H	Glycine cleavage H-protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033753 all species →	Family	Glycine cleavage system H-protein/Simiate	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR002930 all species →	Family	Glycine cleavage system H-protein	Interproscan
IPR017453 all species →	Family	Glycine cleavage system H-protein, subgroup	Interproscan
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11715 all species →	GLYCINE CLEAVAGE SYSTEM H PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0009249 all species →	Biological Process	protein lipoylation	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02437	gcvH, GCSH; glycine cleavage system H protein	-	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27351.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

262.9Max TPM

140.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	141.19	188.31
whole animal · symbiotic	36	34	139.22	262.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	188.31
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	185.92
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	181.27
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	174.68
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	173.37
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	172.29
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	171.89
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	169.22
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	168.89
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	165.92
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	164.91
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	163.77
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	159.37
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	157.95
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	155.12
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	154.53
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	154.40
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	152.58
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	149.64
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	148.88
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	143.07
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	139.19
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	138.36
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	133.54
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	133.23
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	131.50
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	130.68
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	128.24
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	126.76
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	121.41
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	117.35
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	112.98
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	109.62
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	104.05
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	262.89
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	210.36
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	176.20
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	168.33
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	162.31
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	161.47
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	159.42
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	157.91
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	157.05
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	154.55
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	153.47
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	152.96
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	151.98
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	149.06
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	148.38
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	147.90
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	147.44
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	147.42
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	147.05
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	143.77
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	141.17
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	136.81
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.36
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	131.29
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	129.88
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	128.76
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	124.91
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	123.24
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	118.95
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	118.45
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	117.36
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	117.24
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	116.58
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	116.11
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.