Gene detail

Detailed information of KXJ27384.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:1052861...1068910
NR annotation: KXJ27384.1, Sodium- and chloride-dependent GABA transporter 1 [Exaiptasia diaphana]
Species abbreviation EDIAP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27384.1

ATGTTGGTAGTGTCTTTCATGTGTTGTGTTTACTACAATGTCATCATCGCTTGGTGCCTGTACTACATGTACGAATCSTTTGGAAGTGAAGTGCCTTGGAAATACTGCGGYAATCCATGGAACACGGACAAGTGCCATCGAGGGAGAGCGCCGCTGATCCTCAAGAACGTCACAAACTCCACGCTGTGCACCATCGGCTCCAACCTTACAAACCCAAACTGCATTGCGGTCAAGGCTGACGTCATCACTCCYAGCAAAGAATTCTGGGAACGCTACGTGCTTCAAATCAGCGACAATATTAGCAAATTTGGCGAGATGAGATGGGAACTGTTTGTTTGCCTTGTGTTGTCATGGATTCTTGTGTATTTTTGTCTGTGGAAGGGAATCAAGTCGTCGGGGAAGGTCGTGTATTTTACAGCGACGTTCCCGTACGTTGTTCTTGTGATTTTGCTAATTAGAGGTGTCACCTTGCCCGGTGCATCAAAAGGGTTGTTGTTCTATCTTAAACCTGACTTCTCGAAGCTTGGTGAGGCCATCGTGTGGGTCGATGCTGCAACACAGATATTCTACTCGTTGGGGATTGGTTTTGGGTCGTTGATAGCCATGGGTAGCTACAATAAGTTCCATAATAACTGCTACAGGGACGCCATTATAGTCGCTAGTATCAACTGTAGCACTAGTGTGTTCGCTGGCCTCGTCATCTTCAGCGTGCTGGGTTTCATGGCCGAGGTTCTCGGTAAAGAAGTCTCCGAGGTCGCCACGTCAGGTCCTGGATTAGCCTTTGTGGTGTATCCCGAGGGTCTTGCTCAGATGCCTATTTCGCCGCTATGGTCAATCTGCTTCTTCTTCATGCTGATYACCCTTGGTCTAGACACTCAGTTTGCCATGTTCGAGGCTGTTACTACAGGTTTGGGCGACGAATATAGCAAATTCCTCAAGCATCGAATGGAGCTCTTTATAGCSTTTCTTTGCTTCGTTGCATTTCTACTTGGAATTCCAATTGTTTCWCAGAGTGGAGCTTACATTCTAAACTTGTACGTATGGCAGTCTGGAGGTATCTCYCTCGTGTTCCTTGCGTTCTTTGAAGTGGTGGTAGTAGGCTGGTGCTATGGTGCTGAYCGTTTTGCTAGAGATATCGAAGTTATGATAGGATATAAGATCAATCGTTGGTGGACGCTTGCCTGGAAGTTTTTTACTCCAACTGTCATAATTGGTAAAGCATTCTGTACCATGGGTCATGACAGCAAAAATAGCACCCTTGATGAGAGATATACTGACAAGTACATTCTTGCACCAATGGTACGGATTGGAACTCTACCGTCAAGACTTTTAGCATTACGGTATGGTGCCGATCTTGTCTACTCTGAGGAAATTATTGATTTTAAGATACTCAAGACTACAAGAATTGAAAACAAACGTTTGCAGACGGTTGACTATGTAATGGCAGACGGAACTGTGGTCTTCAGAACATGCAAAGAAGAAAGTGATAAAGTGGTCTTTCAAATGGGTACTGCTGACCCAGAAAGAGCTCTTAAAACAGCTTTACATGTGTTACAAGATGTTTCTGCTGTTGATGTAAATATGGGCTGTCCAAAGGATTACTCTGTTAAGGGTGGTATGGGTGCTGCATTACTGACAGAACCAGAAAAAGTCTACAATATTCTTACAACATTAGTCAAAGGAATTAATAAACCTGTAACATGTAAAATTAGGATTTTACCCACAACTCCTCGCAGCCATTTTCCGGTGTCGTCTCGGAGGATTAATTTTTACCCAGCAGAGATAATTCTGGAATTAAACGCTGACCCTGTTCTAGAAAAAAAATCGGTGAAATCGATACCCTGTTCCAGAGTAAAATCGCTGAAAACGATACCCTGGGAGAAGCATGAGAGGTCTCATCAACCAGTTCATAAAGAYGTAATTAGGGCAGTAGCCGATGCACTGTCTATTCCTGTCATTGCTAATGGTGGCTCTTTGGACATAACRACATTTGAAGAAATGAAAAAATATAAACAAGAAACTGGTTGCTCATCTGTGATGGTTGCTCGGGCAGCTCAATGGAATTTATCAATTTTTAGGAAAGACGGTCCTTTACCAAGAACACAAGTAGTAAAGGAGTACATAAAGACTGCAATAGACTGTGATAATTTGTTTAGTAACACAAAGTTTTGTGCCATTACATTGATGCATGACGAACATACTACTGACTTGTCACAAAAGCTGACAGCATCTAGTGATATGGAAGAAATGAGTGCTCTTGTTGATCTTCTTCCCTACTACAAGAGCTGTCTGGAGAGAAGAGTCATTTACGATAGAACAGAGAGTGAAAATCAACCAGAGCCATTATTCACTGTCACCAAAAGGAAATTAAGCGACGAAGAATTCTGTGATGTCTATGAAATGAAAATTAAATTTATCAGAAAGAATTATCCAAATGCAGTAACTCCGAAAGTAATTCTAACAAATATGACAAGAAAACAAAAGCTGAAACCGCCAGTTTATGATACGATTATCGAGGATCAAACCAAAGCTTTTCGAAGTACAGTGACTGTCGACGGTAAAAAATACACCTCAACTGAATGGGAAAAAAGTAAAARGTTTGCWGAGCAGGCTGCAGCAATTGTTTGCCTTCAAGCAYTAGGAATCCATGATGGGAGAATCAAGCAAGAGCTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31648	Sodium- and chloride-dependent GABA transporter 1 OS=Mus musculus OX=10090 GN=Slc6a1 PE=1 SV=2
P23978	Sodium- and chloride-dependent GABA transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc6a1 PE=1 SV=1
P30531	Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens OX=9606 GN=SLC6A1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000251 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00209 all species →	SNF	Sodium:neurotransmitter symporter family	Family	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF01207 all species →	Dus	Dihydrouridine synthase (Dus)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000175 all species →	Family	Sodium:neurotransmitter symporter	Interproscan
IPR044463 all species →	Domain	DUS2, double-stranded RNA binding domain	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR037272 all species →	Homologous_superfamily	Sodium:neurotransmitter symporter superfamily	Interproscan
IPR035587 all species →	Domain	DUS-like, FMN-binding domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR018517 all species →	Conserved_site	tRNA-dihydrouridine synthase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11616 all species →	SODIUM/CHLORIDE DEPENDENT TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0017150 all species →	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ27384.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.