Gene detail

Detailed information of KXJ27388.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:1552024...1555059
NR annotation: XP_020897737.1, xylulose kinase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75191	Xylulose kinase OS=Homo sapiens OX=9606 GN=XYLB PE=1 SV=3
Q3MIF4	Xylulose kinase OS=Rattus norvegicus OX=10116 GN=Xylb PE=2 SV=1
Q3TNA1	Xylulose kinase OS=Mus musculus OX=10090 GN=Xylb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006978 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02782 all species →	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan
PF00370 all species →	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042024 all species →	Family	D-xylulose kinase	Interproscan
IPR000577 all species →	Family	Carbohydrate kinase, FGGY	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR018485 all species →	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan
IPR018484 all species →	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10196 all species →	SUGAR KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004856 all species →	Molecular Function	D-xylulokinase activity	Interproscan
GO:0042732 all species →	Biological Process	D-xylose metabolic process	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005997 all species →	Biological Process	xylulose metabolic process	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00854	xylB, XYLB; xylulokinase	EC:2.7.1.17	Pentose and glucuronate interconversions	ko00040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27388.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

34.2Max TPM

11.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	10.68	34.15
whole animal · symbiotic	36	31	12.14	23.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.15
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.68
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.53
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.76
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.46
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.23
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.79
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.78
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.70
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.52
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.48
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.38
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.34
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.25
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.09
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.49
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.18
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.76
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.42
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.23
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.18
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.15
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.13
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.94
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.73
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.57
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.55
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.54
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.03
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.19
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.34
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.06
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.15
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.69
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.12
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.12
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.70
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.55
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.73
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.53
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.48
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.38
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.10
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.95
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.30
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.19
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.89
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.45
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.31
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.84
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.80
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.64
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.35
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.35
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.98
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.58
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.45
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.41
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.35
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.08
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.92
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.35
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.21
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.