Gene detail

Detailed information of KXJ27391.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:1583913...1596169
NR annotation: KXJ27391.1, Integrator complex subunit 8 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27391.1

ATGGCGGCAAAAGATAATCAAGAAGCRCTCTCTTGGTTCGAGTTTCTCTTTGATGAAAAAGGAGAACTATTGAAGGATCACCTCAAAAGCTCAACAGCAGAACCTACGGCTGCACAGCTCATTGTACAATTTCTGGAACGCTCAGGAATATGTTCCAATAATAATGCGCAAACTGTAGAGCATTCCAACCCAGTTGATAGTAAACGATTTAAACGTCTCAAGCAGTTGGCTCTTCAAGTTGGCTTTCAYATGGAATGGAACCTGGAGACATTTGAAAATAGTCTTTCATTGCACTGGCAAAAACTGTTTTTTGATGAGCTGTTGAAAACTCAAGTGCCACAGTATAAAAGTTTTCTAAATGGACARGTTTGTCTGAAAGAACTAGACAAACAGTCAGCCATGGCTTTGGTTATTTAYTGCCGTTGGGTGATACGAACCTTAGCTCAGCACTTCTTGCCAAACATTGGGAAGCCTAAGACAGGTTTAATGGAAGCTGCAGAAAATGAAAATACACTGAAAAATCTYAAAGAACAACTTTCAACCAGCATTTCCATCCTTGAAGATGCTTTGTTGCTYACTGAGGACCTTGAACTACCATGTCCTTTTGATYCACCCACCCCTRGTRAAACAGATACAAGCAAGATTGATRYCCCCCCTGAAACTTCAATCAAAAATACAGAAACTAGTGTTTCTCCCAGTGACACAGATACTGGTAWTGCCACCTGTGAGAAAGCCAGTGATCATGTTGATACAAAGGATACTGAGTCTATATCTGGTAAAACAGAAGGGAATAGCAGCACTCCCCCTGAAATAAAAGAAGAACAAAGCACTGATAAGACAATGAATGTAGAAGATTCAGAGAAAACATCTGAAGAGACAAGCAAGTCATATCACACAATTTGTACACAGAGTGTTAAAGTGAATATCAAGGAGCTCGTTGCTCAGGTGTCCTTTGATTTAGGAACGCTCTATTTTTATCAAGAAAAGTTTGAAAAAGCAGCAAAATTATTCCAACATTGTAAAGAATCCAAATGTTGTACATCATCATGCTATACTGTGAATGAAGACATGTTACATGGCTAYTAYATGTCATGCTGTGGTTTGTTGAAYATACCACCTAAAATYACSYTGTTCAGCTCYGATCATGAAGGCAGAGGTTACAATGTCTCTCTCTTTGAGAAGGTTGAACATTGCAGATTGTCCTCTCCTCAGGATATGATAAACCTACTCATCCAAGACAACATAGCACTTGAGCTTCCAATGGATTATAGACATGCCCTAGAGAAGAGCACTGTCAATGAAGAAACTATTCCAGATCAACCTRGCCTTMCATGGCAGATAGCTGCTTGCAATGCTATTAGACAGGTGATAGAGAATAAACCTTTRAATGCCATATTYTGGGACAAAGTAAAGAAAGGACTGCATGGGGAACTGCAATGTATTTTGTCTCTCTGTTCAAAAACATTTCAAGAAATGAAGAAATCCTCTGCACTGTGGGCTGATAGCGACACAAGATTTCTTGCTCTAAAGTCTTTTGTACTTTTACTTTGTAGCTGTGTTGATAATGGCTTTGAGGTTGCAAAGAATTCAGAAGAAGACGTTTTTGTACAAAATCTGCAAATACCAAATGAYTCACCTATGGATGAAAAGGAGCCTTTGACATGGAAACCTGTAGATATCTTTGGAGAATGTGACAGAGATGATGCAGATCTTAGATGTGGATGGCTTCTTCATAAACTACGCTCATGTTTTGATGCTGTAGAAATAAGTAGTCTGATTGAAGAACTTCACAGAATCCAGCCATCAAGACGATTTCACAATGAGAATTTTACTTGCATGACTTATAAATCCTGCCTGGATGGTGTACAAGACCCTGTGGTACAAGATTTACTACATGTCATCCTGTCAAAGTCACTACATTGCTGCACAACAAAGCGATATGGATTATGTGAGGAAATGCTGAGCTTTGCATTGGGTAGACTGACAACTTTAAGTGGTTCTGGGACTGAAATTGAAAGAGTCAAAGCAGTACTGCACCAGGAATTGCTTGTGACAGACCTTCAAAAACATGCTGATAGACAAAAGAATGAACTTATTGACTCAGTTAAATCTTACCTCAAGCGTACTAAAAACATTCCTTCAGCCAAGGCAGACAACCTTGCTGTAGCTTACTTACTGAACATGAAGGAGTTTTCATTTYTATCAACTCTCAGAACTGATGGAGAGGATGACATGTCAGTCATGGACACAAAGAAGCTTGGATCACTGCTTGCRTCTGCYTCACTGTCCATTACAAAGCCTCAAGAATGGAGGAAGTCAATAAGGTTAYTATGGGATGGAGTCCTTCGAGTGTTTACTACAACTMTGCAGCAGAAACGCCCACAAGAAGGRMGRCCTCCTATTTCTATAAGACGAGATGCTGCTAACTTAAACTTATCCAGTTTTAACACTTTTGTGGGTCATCTAAAGGATGAAACCTGTTTAGGTGTTCTGATATCCTGCCTTGCCAGGTTATTTAATTTATCTAAGGATGGGCAGGAGAATTTCAGGGAAATCTTCAGTTCGTATGGACATTTATGGCCAACATCTATCACCAATCGTMATTCTGTGAATTTTGAACAGATCGAAGCAGCCATGATGCAYATCACACAACACGGTGTCAAGCTACATCCATATAACGTCACATGGATACAAACACTAGCAGAYATTTTTCTTAACTCCAAAAACTTCCCTTCAGCCTTCAAGMGATATCTAGAGTCAGGGGCTTGTTCATCCTTAATGTTTGCACAACCAGTACCAGTTACGGTGTGGGATTCTCAGGTTTTTAGAAAGATGGTAGATTGCTGCATGCAGCTGAAGGCTCACATTCAGGGTGCGTTACTTTGTCAATGCGTGGAGCCTAAGGATTATGTGACGGCATTCAAGGCTATTCAACTAACAGCTCTTTCCAGTGAGGACGCAATGGACCGATACTATTCGTTATTCTGGGACGTCACCATGCTGGAATACCTTATTAACACTCACTTTAAACAAGGACAACACGACAAGAAGCAACTAGCGATTCAAACGATTAGTCAAGCCGAACTGAATATCTTCAATAATCAAGAAGTTCTGCAACGCGCAGAATCCATTAGAAAATCGTCGCTATTCCGATCTCTCTCCAAGCAGTACTTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q75QN2	Integrator complex subunit 8 OS=Homo sapiens OX=9606 GN=INTS8 PE=1 SV=1
Q80V86	Integrator complex subunit 8 OS=Mus musculus OX=10090 GN=Ints8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002611 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for KXJ27391.1 in Exaiptasia diaphana.

InterPro

InterPro term	Type	Description	Source
IPR038751 all species →	Family	Integrator complex subunit 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13350 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13145	INTS8; integrator complex subunit 8	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27391.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

61TPM > 0

2Conditions

12.5Max TPM

6.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	30	5.22	9.15
whole animal · symbiotic	36	31	6.87	12.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.15
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.47
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.22
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.88
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.69
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.63
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.30
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.25
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.13
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.05
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.59
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.58
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.52
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.36
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.20
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.19
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.19
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.17
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.98
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.82
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.67
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.53
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.24
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.12
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.75
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.47
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.44
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.37
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.29
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.76
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.51
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.16
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.60
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.88
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.63
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.41
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.35
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.18
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.51
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.26
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.21
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.01
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.71
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.31
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.17
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.11
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.04
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.02
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.96
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.93
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.76
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.50
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.46
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.05
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.87
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.87
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.69
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.66
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.17
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.89
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.31
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.