Gene detail

Detailed information of KXJ27394.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:1527163...1533871
NR annotation: KXJ27394.1, Pre-mRNA-splicing factor cwc2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27394.1

ATGGCGGTCGTCAATGAAAGTTTGAAAATTTGTACATATTTAGAAAATCTTCTAGAGGACACATTTGGGCCTTGTGGTCTTGATATAATGCTGAATTCGTCGTCAGGCAAGATACTGATTACAAATAGTTGTGGCGTTATTGTGAATTCTTTGTGTTTTGGTCATCCTKTGGCAAATGTTATTGTTGACAAGTTAAAGAGTCACAATGAAATCACTGGTGATGGCTGTTGTGCATTTATTTTGGTGCTTGCACAAGCTTTAAGAGGAATAGCTGATGTACTGCAAAGCAAGAGTCAAGCAGAKTTAACTACATCGTCGTTACAAACGATGTTATCATTATCAAAGCATTTTATGAAGATGCAAAGTGAGCTTGAATTCCTTGTCCGGCCAAAACTAGAGAAAATTTCGACTTCTGTTGATTTAAATTCAACAAGTCAAACTTCAGTAAACGAAGTATTATCGCACACCATTCATTCTTGCTTGAATGGGAAATTCTCTAAAAGTGTACAAAAGCTGCTATCAAAACWTCTGTTGGATTTGATTACAAAGACTTGTTCTCGTGATAATTTTTATGATGACATTATTAAGCTTATCGATGACTTGCCTCAATGGTGTATTCAGTTTCATGGTATGCCTTTTCTTAATTCACACATAGAGGAAGGGTTTGCAATACCAAGGGAACTCYCAACTGGTCAGGATGTCGCWTTACCAAAACCAGGAGAAACATCATTCACATTCATTTTATTACAGTGCTCCTTGGATTGCAGTAGAGATTTTGAAAAAGCGGAACTAGAGGTTGAAAGTCTGTCACTACACTCTAAAGCTCTATTACATAACCAAACGACATGTTTTTCTATATTAAAATCATTCAAGGAACAAGATATCCAACTTTTAATTTCTTCTGAGAGTGTTTCCGACATGGTTCTGCACTTGTGTCGTCAACTTGGAATAGCTGTCATTCAAATGGTTCCCATGGAAACCACTGATTATATCTGCAGGCTGGCAAATGTCCAGCCAATCTGCAGTGTCAACCAGAATGATATTCAAAGTATTTCTGATAACTATAAAGGAAAGGGTTGCAGCTGTTTAGAAAAGATCGTAGCTGGGCAAAAGCATGTTCAGTTGACGTGTGTTTCACCGCAGTCAACGCAAAGGATTTATCATATTGTTTTAAATGCTCCAACCCAAGGCCTACTACAACAGTACTGCATYGGTATTCAARSTGCTCTCAARTGCATTAAAATGTCATTCTCAGAGTCTCATAAAGAATTGACTTTGCTACCAGGATGTGGATCGGTAGAATTTGTCATTTCGCAAATATTTGATGAATTATGCCAAGCCACCACAACTGAACAAATGGCCACAGCCTTTGGTGTGCTTAGTAAAGCATTCCTACAAATACCAAGAGTGCTTCACAGGAATTCACATCAGTCTGGCGATTCTAATTATATGAGGGTTCAGGCAAAGATGTTAGCATCATGGAAGAGAGGCATTTTGTTAGGAGTAGATGAGAAGACAGGCGATGTTGTGGACCCTCATAGCATTCACATTTATGACCCTTATCAAGGGAAAATACTGTTGATCAGCCATGTGCTGCAATGCCTAGCAAAGTTGCTTAGAATAGATAAGATAATTGGTGTTAGTTGCCTGAGTGTTAAAACTATCCCCAGTCTCCCACAGTTTCAACAAAGGAAACCCAAACTTCATAGTAAAATCAACATGGCGGCCACCAAGAGAAGTCTTGAGGAAGAGAATACTCAAGCGAAAAAACCTTGTAGCGATTCATCTTCTATCGAAAATACACAACCCAGTGATGCTAATGAATATTATTCATCGTATTACCAAGTCTGCGAACACAGAGGCAATTGGATGTCACTTTACGATACTACTTCTGGATTTTTCTACTACCAAAACACAAAAAACTTACAAACTCAGTGGGAAAAGCCAGCAAATTGGGACAATTTACCGCCAGTATTTAATCCATGGATAAAAATGAAATCTTCTGTAAACAATCAAACGGTAAAACCACCCGAGCCTAAGGAGGAACCAGAATTTAAAAGTTTAACGAATAAAGAGTTCGAAGAAAAGCTTGATAAACTCATGAAACGACCTGCAAGAAGACAGGTCGATCCAGGAGARAAGAGCAGACAACATTGGATTCCCGAGGGATCTACAGAGTAYAATATATGGTATGATAAATGGGTTGGAGAGAACTGGCATCCAGATGACGGCCCTGCTGAAACTAGATGTTGTTTGGAAGACGATGCTGGATTCACCACAGCTAACATCATGGATCCAAAAAGCAGTAGACACCTTTTCTGTCTGTACTTTGCTAAAGGTTGCTGTCAYCTTGGAAAGGAGTGTAATTTTCTTCATTCTATTCCAACTGATAAAGACGAAAAAAGGATTGGTCTCACTGTTGATTGCTTTGGKCGTGAACGTCACCTAAACCACAAAGAAAACCTAGGWGGGGTGGGGTCCTTTGAGAAGGATTGTACAACACTTTATGTTGGTGGYCTTGGAAGTCGCAAAGCTGTTGAAAAAGAACTCTGGGAAGAGTTTGGAGAATGGGGAGAAATTGAGGACATCAGAGTTATAGCAAAGAAAAATATTGCTTTTGTAAGGTTCAAAAACAGACTGAATGCAGAGTTTGCAAAGATTGCAATGGGTGACCAACGGTTGGGTTGTAGGGATGTACTCAATGTCAGATGGGCAAATGATGACCCRAATCCCAGGGCTTACAAAAAGGATTTAGAAAATGCTAAAGAAAAGCTAGTCGAAGCAGCTCATGAGAAAGGAATTATCCAAGAACTAGAGTCCAGACCTCAACCAATAGAAAGTGGTGATGGAGTGACTGCACCTTACCCCAACACTAATAGTCAATATTCTAACCATGAATATTGGTCATGGTATTACAAGAATTTGGGCTACGACAGCCACAACAACTATCAACAACAACAACAACAACAACAACTTTATCAACAAGCACAACAAGCATATTCACAACAGCAACAGAAGTTTATATGCACAGCAGCAACAACAGCAACAGCGTTTATATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54PH5	Pre-mRNA-splicing factor cwc2 OS=Dictyostelium discoideum OX=44689 GN=cwc2 PE=3 SV=1
Q5BB35	Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cwc2 PE=3 SV=1
Q6T412	Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans OX=5022 GN=CWC2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF16131 all species →	Torus	Torus domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR042619 all species →	Family	Bardet-Biedl syndrome 10 protein	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR034181 all species →	Domain	Pre-mRNA-splicing factor Cwc2, RNA recognition motif	Interproscan
IPR032297 all species →	Domain	Torus domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14667 all species →	BARDET-BIEDL SYNDROME 10 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ27394.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27394.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

62TPM > 0

2Conditions

14.9Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	30	4.27	14.87
whole animal · symbiotic	36	32	5.53	12.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.87
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.39
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.13
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.48
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.13
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.06
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.06
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.99
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.80
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.70
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.57
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.27
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.13
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.02
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.91
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.67
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.64
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.55
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.44
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.36
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.34
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.74
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.69
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.50
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.32
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.24
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.16
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.88
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.86
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.77
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.99
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.98
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.84
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.79
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.21
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.99
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.80
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.72
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.67
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.67
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.65
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.61
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.56
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.49
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.27
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.22
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.16
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.99
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.74
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.71
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.37
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.24
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.23
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.23
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.93
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.92
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.86
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.83
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.77
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.24
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.92
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.47
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.