Gene detail

Detailed information of KXJ27442.1 in Exaiptasia diaphana

Genomic Location: LJWW01000020.1:962509...970910
NR annotation: KXJ27442.1, Alpha-L-fucosidase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3YWU0	Alpha-L-fucosidase OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_56888 PE=3 SV=2
Q6AYS4	Plasma alpha-L-fucosidase OS=Rattus norvegicus OX=10116 GN=Fuca2 PE=2 SV=1
P04066	Tissue alpha-L-fucosidase OS=Homo sapiens OX=9606 GN=FUCA1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000718 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16757 all species →	Fucosidase_C	Alpha-L-fucosidase C-terminal domain	Domain	Interproscan
PF01120 all species →	Alpha_L_fucos	Alpha-L-fucosidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000933 all species →	Family	Glycoside hydrolase, family 29	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR031919 all species →	Domain	Alpha-L-fucosidase, C-terminal	Interproscan
IPR016286 all species →	Family	Alpha-L-fucosidase, metazoa-type	Interproscan
IPR018526 all species →	Conserved_site	Glycoside hydrolase, family 29, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10030 all species →	ALPHA-L-FUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004560 all species →	Molecular Function	alpha-L-fucosidase activity	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006004 all species →	Biological Process	fucose metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01206	FUCA; alpha-L-fucosidase	EC:3.2.1.51	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27442.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

353.1Max TPM

230.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	238.20	353.14
whole animal · symbiotic	36	36	222.02	313.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	353.14
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	344.30
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	343.51
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	343.34
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	337.58
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	334.71
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	326.99
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	283.70
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	282.29
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	279.78
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	278.83
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	275.67
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	275.66
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	272.63
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	271.71
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	270.87
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	257.58
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	256.26
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	252.48
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	240.46
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	240.24
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	236.03
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	221.98
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	197.04
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	169.28
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	163.04
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	162.18
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	154.46
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	150.68
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	150.39
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	146.40
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	144.98
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	144.33
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	140.84
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	138.50
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	133.33
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	313.08
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	276.85
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	274.57
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	274.57
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	273.56
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	267.98
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	265.49
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	261.86
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	261.14
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	260.83
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	255.45
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	255.17
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	253.41
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	253.12
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	249.29
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	248.26
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	246.44
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	243.21
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	234.73
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	227.72
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	225.94
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	221.58
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	220.79
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	220.71
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	194.98
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	192.25
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	187.03
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	183.38
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	180.91
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	179.17
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	140.39
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	137.95
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	137.85
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	126.20
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	123.71
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	123.13

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.