Gene detail

Detailed information of KXJ27477.1 in Exaiptasia diaphana

Genomic Location: LJWW01000020.1:702136...705768
NR annotation: XP_020897092.1, tetratricopeptide repeat protein 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99614	Tetratricopeptide repeat protein 1 OS=Homo sapiens OX=9606 GN=TTC1 PE=1 SV=1
Q3ZBR5	Tetratricopeptide repeat protein 1 OS=Bos taurus OX=9913 GN=TTC1 PE=2 SV=1
Q91Z38	Tetratricopeptide repeat protein 1 OS=Mus musculus OX=10090 GN=Ttc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006930 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052769 all species →	Family	Tetratricopeptide repeat domain-containing protein	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46014 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24926	TTC1; tetratricopeptide repeat protein 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27477.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

75.4Max TPM

20.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	18.17	48.59
whole animal · symbiotic	36	32	21.78	75.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.59
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.20
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.05
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.51
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.47
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.37
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.73
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.25
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.94
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.38
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.26
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.45
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.42
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.38
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.15
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.15
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.86
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.72
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.58
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.27
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.08
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.73
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.44
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.43
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.18
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.06
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.16
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.67
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.62
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.02
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.97
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.42
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.07
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.34
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.06
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.88
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.33
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.47
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.72
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.71
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.78
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.12
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.97
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.54
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.06
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.05
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.82
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.66
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.72
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.66
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.38
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.33
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.19
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.98
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.93
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.11
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.82
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.46
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.10
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.24
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.54
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.29
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.23
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.