Gene detail

Detailed information of KXJ27495.1 in Exaiptasia diaphana

Genomic Location: LJWW01000020.1:476832...483494
NR annotation: XP_020897059.1, 5'-AMP-activated protein kinase subunit beta-2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PAM0	5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab2 PE=1 SV=1
Q5BIS9	5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus OX=9913 GN=PRKAB1 PE=2 SV=3
Q9QZH4	5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005394 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04739 all species →	AMPKBI	5'-AMP-activated protein kinase beta subunit, interaction domain	Family	Interproscan
PF16561 all species →	AMPK1_CBM	Glycogen recognition site of AMP-activated protein kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037256 all species →	Homologous_superfamily	ASC domain superfamily	Interproscan
IPR006828 all species →	Domain	Association with the SNF1 complex (ASC) domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR050827 all species →	Family	CRP1/MDG1 DNA-binding & kinase subunit	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032640 all species →	Domain	AMP-activated protein kinase, glycogen-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10343 all species →	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0031588 all species →	Cellular Component	nucleotide-activated protein kinase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07199	PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit	-	Insulin resistance	ko04931	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27495.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

338.1Max TPM

83.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	35	85.87	338.09
whole animal · symbiotic	36	35	81.51	108.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	338.09
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	179.36
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	92.71
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	91.29
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	89.64
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	89.13
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	84.99
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	84.62
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	84.39
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	83.98
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	83.13
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	83.06
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	82.87
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	80.95
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.52
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.21
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.14
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.11
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	79.06
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.96
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.69
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.48
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	77.13
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	76.22
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.89
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.87
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.84
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.21
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.55
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.37
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.26
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.21
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.01
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.92
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.31
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	108.91
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	105.35
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	102.06
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	100.54
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.18
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	94.36
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	93.95
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	91.04
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.55
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.25
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.95
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.49
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.24
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	88.64
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	87.72
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.57
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	85.50
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	84.64
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	83.93
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	83.71
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	83.54
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.84
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.56
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.50
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.28
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.06
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.86
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.51
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	73.18
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	70.84
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.47
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.32
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.29
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.73
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.72
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.