Gene detail

Detailed information of KXJ27503.1 in Exaiptasia diaphana

Genomic Location: LJWW01000020.1:557666...567862
NR annotation: KXJ27503.1, Tryptophan--tRNA ligase, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UGM6	Tryptophan--tRNA ligase, mitochondrial OS=Homo sapiens OX=9606 GN=WARS2 PE=1 SV=1
Q3T099	Tryptophan--tRNA ligase, mitochondrial OS=Bos taurus OX=9913 GN=WARS2 PE=2 SV=1
Q9CYK1	Tryptophan--tRNA ligase, mitochondrial OS=Mus musculus OX=10090 GN=Wars2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024109 all species →	Family	Tryptophan-tRNA ligase, bacterial-type	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002306 all species →	Family	Tryptophan-tRNA ligase	Interproscan
IPR050203 all species →	Family	Tryptophan--tRNA ligase	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43766 all species →	TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004830 all species →	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006436 all species →	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0070183 all species →	Biological Process	mitochondrial tryptophanyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01867	WARS, trpS; tryptophanyl-tRNA synthetase	EC:6.1.1.2	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27503.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

60TPM > 0

2Conditions

18.1Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	30	7.13	13.74
whole animal · symbiotic	36	30	8.42	18.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.74
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.87
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.75
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.09
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.66
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.58
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.41
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.27
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.92
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.52
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.50
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.12
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.08
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.99
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.17
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.15
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.05
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.75
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.70
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.59
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.04
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.96
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.80
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.76
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.57
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.38
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.34
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.89
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.17
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.84
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.13
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.49
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.27
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.20
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.64
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.51
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.22
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.17
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.80
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.68
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.98
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.90
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.14
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.04
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.86
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.83
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.75
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.23
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.59
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.25
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.21
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.13
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.99
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.94
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.70
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.30
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.26
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.17
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.79
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.10
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.