Gene detail

Detailed information of KXJ27509.1 in Exaiptasia diaphana

Genomic Location: LJWW01000020.1:551830...557566
NR annotation: XP_020897131.1, charged multivesicular body protein 1b [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E994	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1
Q7LBR1	Charged multivesicular body protein 1b OS=Homo sapiens OX=9606 GN=CHMP1B PE=1 SV=1
Q99LU0	Charged multivesicular body protein 1B1 OS=Mus musculus OX=10090 GN=Chmp1b1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03357 all species →	Snf7	Snf7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005024 all species →	Family	Snf7 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10476 all species →	CHARGED MULTIVESICULAR BODY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0000815 all species →	Cellular Component	ESCRT III complex	Interproscan
GO:0005771 all species →	Cellular Component	multivesicular body	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0032509 all species →	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0045324 all species →	Biological Process	late endosome to vacuole transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12197	CHMP1, VPS46, DID2; charged multivesicular body protein 1	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27509.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

186.5Max TPM

57.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	64.58	186.50
whole animal · symbiotic	36	34	50.53	133.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	186.50
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	103.34
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.30
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.11
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.08
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.77
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.64
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.86
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.47
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	67.31
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.90
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.87
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	66.12
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.58
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.41
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	64.20
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.73
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.54
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.07
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.10
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.87
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.77
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.20
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.83
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.50
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.19
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.69
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.66
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.60
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.51
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.45
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.01
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.14
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.55
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	133.14
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.10
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	65.56
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.83
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.52
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.44
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.39
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.97
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.30
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.24
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.21
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.92
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.61
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.54
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.11
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.91
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.90
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.99
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.01
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.84
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.60
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.32
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.72
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.14
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.63
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.45
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.17
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.15
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.81
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.58
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.48
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.93
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.52
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.05
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.