Gene detail

Detailed information of KXJ27589.1 in Exaiptasia diaphana

Genomic Location: LJWW01000019.1:570768...580444
NR annotation: XP_020896071.1, intraflagellar transport protein 52 homolog [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62559	Intraflagellar transport protein 52 homolog OS=Mus musculus OX=10090 GN=Ift52 PE=1 SV=2
Q9Y366	Intraflagellar transport protein 52 homolog OS=Homo sapiens OX=9606 GN=IFT52 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004959 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21178 all species →	Itf52_C	Intraflagellar transport protein 52, C-terminal domain	Domain	Interproscan
PF09822 all species →	ABC_transp_aux	ABC-type uncharacterized transport system	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR048643 all species →	Domain	Intraflagellar transport protein 52, C-terminal domain	Interproscan
IPR039975 all species →	Family	Intraflagellar transport protein 52 homolog	Interproscan
IPR019196 all species →	Domain	ABC-type uncharacterised transport system	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12969 all species →	NGD5/OSM-6/IFT52	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19681	IFT52; intraflagellar transport protein 52	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27589.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

58.4Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	15.35	38.70
whole animal · symbiotic	36	32	15.10	58.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.70
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.21
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.93
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.25
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.45
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.11
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.71
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.54
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.87
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.82
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.60
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.47
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.44
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.15
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.91
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.88
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.77
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.51
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.29
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.77
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.75
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.47
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.24
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.11
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.04
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.72
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.67
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.47
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.44
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.41
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.24
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.11
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.63
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.44
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.84
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.62
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.54
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.47
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.46
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.32
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.16
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.00
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.98
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.81
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.75
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.62
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.30
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.18
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.16
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.12
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.95
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.91
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.67
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.21
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.05
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.83
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.70
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.49
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.06
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.98
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.94
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.62
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.46
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.80
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.25
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.