Gene detail

Detailed information of KXJ27625.1 in Exaiptasia diaphana

Genomic Location: LJWW01000019.1:214530...221927
NR annotation: XP_028513642.1, ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N6T3	ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=ARFGAP1 PE=1 SV=2
Q62848	ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus OX=10116 GN=Arfgap1 PE=1 SV=1
Q9EPJ9	ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus OX=10090 GN=Arfgap1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005200 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46395 all species →	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0030100 all species →	Biological Process	regulation of endocytosis	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12492	ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27625.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

68.0Max TPM

39.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	35.21	62.66
whole animal · symbiotic	36	36	43.88	67.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.66
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.72
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.10
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.09
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.89
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.15
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.47
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.02
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.00
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.80
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.30
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.06
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.80
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.60
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.10
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.61
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.35
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.15
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.61
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.36
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.20
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.94
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.23
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	34.13
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.01
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.00
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.66
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.56
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.37
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.37
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.24
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.12
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.69
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.01
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	67.97
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.94
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.92
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.74
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.45
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.59
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.11
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.84
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.75
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.68
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.77
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.84
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.79
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.63
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.93
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.35
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.88
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.82
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.50
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.33
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.19
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.10
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.85
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.73
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.72
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.36
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.92
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.82
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.79
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.51
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.43
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.55
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.82
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.65
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.74
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.63

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.