Gene detail

Detailed information of KXJ27644.1 in Exaiptasia diaphana

Genomic Location: LJWW01000018.1:219207...220956
NR annotation: KXJ27644.1, Nucleolar transcription factor 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17480	Nucleolar transcription factor 1 OS=Homo sapiens OX=9606 GN=UBTF PE=1 SV=1
P25977	Nucleolar transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Ubtf PE=1 SV=1
P25976	Nucleolar transcription factor 1 OS=Mus musculus OX=10090 GN=Ubtf PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009120 (this species only)
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR051762 all species →	Family	Upstream Binding Factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46318 all species →	UPSTREAM BINDING TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for KXJ27644.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09273	UBTF; upstream-binding transcription factor	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27644.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

20.6Max TPM

9.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	9.72	20.59
whole animal · symbiotic	36	31	10.14	17.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.59
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.10
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.95
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.61
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.97
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.81
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.80
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.59
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.34
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.32
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.21
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.07
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.23
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.17
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.63
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.40
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.36
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.00
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.96
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.93
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.81
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.78
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.64
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.55
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.49
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.19
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.16
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.66
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.33
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.78
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.50
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.05
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.34
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.72
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.49
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.33
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.12
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.08
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.94
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.48
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.41
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.35
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.22
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.21
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.13
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.96
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.69
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.45
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.85
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.34
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.28
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.90
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.64
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.17
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.15
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.95
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.48
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.46
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.85
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.66
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.21
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.51
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.64
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.