Gene detail

Detailed information of KXJ27694.1 in Exaiptasia diaphana

Genomic Location: LJWW01000018.1:814043...822846
NR annotation: XP_020895427.1, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3ZAH2	Acireductone dioxygenase OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_119977 PE=3 SV=1
Q3ZBL1	Acireductone dioxygenase OS=Bos taurus OX=9913 GN=ADI1 PE=2 SV=2
F6HDT7	Acireductone dioxygenase 2 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04080 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03079 all species →	ARD	ARD/ARD' family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027496 all species →	Family	Acireductone dioxygenase, eukaryotes	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR004313 all species →	Family	Acireductone dioxygenase ARD family	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23418 all species →	ACIREDUCTONE DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0019509 all species →	Biological Process	L-methionine salvage from methylthioadenosine	Interproscan
GO:0010309 all species →	Molecular Function	acireductone dioxygenase [iron(II)-requiring] activity	Interproscan
GO:0006555 all species →	Biological Process	methionine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08967	mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	EC:1.13.11.53 EC:1.13.11.54	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27694.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

72TPM > 0

2Conditions

342.6Max TPM

160.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	36	152.36	292.75
whole animal · symbiotic	36	36	167.82	342.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	292.75
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	176.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	171.39
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	167.26
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	165.00
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	163.29
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	162.53
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	161.25
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	161.08
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	156.08
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	153.84
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	153.30
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	151.85
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	151.35
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	150.44
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	150.25
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	150.12
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	148.74
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	147.86
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	147.80
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	147.58
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	147.04
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	143.38
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	142.86
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	142.71
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	142.38
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	138.08
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	137.82
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	137.19
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	136.81
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	135.89
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	135.74
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	134.45
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	130.23
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	126.79
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	123.97
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	342.61
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	211.18
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	196.27
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	188.06
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	187.71
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	182.08
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	180.65
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	175.45
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	174.10
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	172.95
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	172.64
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	171.22
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	170.24
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	169.30
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	168.35
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	167.50
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	166.10
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	164.18
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	163.41
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	163.01
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	161.79
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	161.30
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	160.30
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	157.24
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	156.82
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	156.14
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	155.63
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	155.27
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	153.96
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	152.66
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	152.62
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	152.62
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	148.07
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	144.84
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	96.22
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.01

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.