Gene detail

Detailed information of KXJ27695.1 in Exaiptasia diaphana

Genomic Location: LJWW01000018.1:910011...913750
NR annotation: XP_020895393.1, ubiquinol-cytochrome-c reductase complex assembly factor 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W6I0	Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Xenopus laevis OX=8355 GN=uqcc1 PE=2 SV=1
Q9NVA1	Ubiquinol-cytochrome c reductase complex assembly factor 1 OS=Homo sapiens OX=9606 GN=UQCC1 PE=1 SV=3
Q9CWU6	Ubiquinol-cytochrome c reductase complex assembly factor 1 OS=Mus musculus OX=10090 GN=Uqcc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007756 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03981 all species →	Ubiq_cyt_C_chap	Ubiquinol-cytochrome C chaperone	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007129 all species →	Family	Ubiquinol-cytochrome c chaperone, CBP3	Interproscan
IPR021150 all species →	Domain	Ubiquinol-cytochrome c chaperone	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12184 all species →	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0034551 all species →	Biological Process	mitochondrial respiratory chain complex III assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17662	CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27695.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

127.5Max TPM

80.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	80.51	119.07
whole animal · symbiotic	36	36	80.69	127.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	119.07
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	115.18
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	109.40
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	109.24
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	109.06
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	108.62
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	106.98
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	106.15
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	104.11
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.37
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	102.30
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	101.09
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	100.98
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	100.69
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	98.38
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	95.00
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	94.77
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	94.59
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	91.34
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	89.42
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	88.75
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	88.47
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.81
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.63
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	57.49
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.38
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.60
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.54
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.53
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.50
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.28
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.66
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.19
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.64
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	127.52
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	126.53
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	108.40
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	108.29
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	103.86
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	103.78
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	102.17
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.83
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	95.30
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	94.84
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	90.15
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	89.39
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	87.96
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.76
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.50
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	81.38
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.71
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	80.04
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.92
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	79.73
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	78.45
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.47
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	75.21
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	72.98
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	69.89
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	64.06
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.96
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.30
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.84
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.02
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.97
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.91
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.22
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.69
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.51
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.40

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.