Gene detail

Detailed information of KXJ27707.1 in Exaiptasia diaphana

Genomic Location: LJWW01000018.1:385084...397744
NR annotation: XP_020895497.1, WD repeat-containing protein 35 isoform X2 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27707.1

ATGTTTATTTACTTAAGCAAAAAGATTGCTATTCCCAATAACACCAAGCTAAGATGTCTAGCGTGGAATAAAGARCAAGGATACATCGCCTGTGGTGGCGATGACGGCTTACTTAAAGTTCTTAAGCTGGAAATGCAGCAAGGAAAGGATAGCAAGGTTAGGGGTTTAGCTGCACCCAGTAATCTATCAATGAATCAAACACTGGATGGMCATACTGAATCAGTGCAAGTAGTRACATGGAATGAACAGTTTCAGAAGCTCACAACCAGTGATCAATATGGATTGATTATYGTATGGATTCTATATAAAGGATCTTGGTATGAAGAAATGATCAACAACAGGAAYAGAAGTGTTGTGAGAGATATGAAATGGAATGCTGATGGACAGAAAATATGTATTGTTTATGAAGATGGTGCAGTTATTGTTGGGTCAGTCGATGGTAACAGGATCTGGGGGAAAGAACTCAAGGGTGTTCAACTAGCACATGTAGAGTGGTCCCCTGATGGCAAGAATATCATCTTTGGTATGGCTAATGGAGAGGTCCAGATATTTGATAACCAAGGAAACTTTTGTACTAAAATGTCCATATTCTGTCTTACAAATGTGACTGGTGCAATAAGGATTGCTGGTATTGACTGGTATAGCAATGCAGACTCTGCAATAGACTCCAATACTCCATGTCTTGCTATCTGTTTTGATAATGGACGAATGCAGATCATGAGGCATGAACTGGATGAAATGCCAGTTTTGATTGACACATCAATGAGTGTTGCTAAGATACAGTGGAATAGTTTTGGTTCAGTTCTGGCTGTAGCAGGATCACAGAGGGCTATTGGACAGGACAAAGATGTCAATGTAGTTCAGTTTTACACACCTGAAGGGGAGCATTTGCGCACACTCAAGGTTCCTGGAAAAGAAATCACTTCAGCTTGCTGGGAAGGTGGTAGTTTACGGATAGCACTGGCTGTTGATTCCTTTATTTACTTTGCTAACATCAGACCAAACTACAAGTGGGGCTTTTTCTCCAACACAGTTGTGTATGCATTCAGTAAACCTGACAGACTTGAACAGTGTGTAGTTTTCTGGGACACTAAAAATGGAGAGAAATTTGTCAAGTATGTGCGTAACCTGCTGTCCATCACGGCATGTGGTGACTATTGTGTGCTAGCAACTAAGACTGATGATGCTACTGCTCAGTATGTTCTTGTTCTCTGCAATGCAATTGGTACACCACTGGATTCTAAGTACATTGAAATAGAACCATTGTTTGTTGCTATGACAAAGAGTTATGTTATCGCTGCATCCAAAGAAGCATTTTACACTTGGCAATACCGCAGTCCTAAAAAACTCACATCACATGAAATACAAGGATCACGACGGAAAGATGTCAGAGAAAGGATGTTTCATATTGATGATGTGCCGTCAGGAGCAGGTGAAGGAATCAAAGATATCAAGAAGGCTCTTGCTCCAACACGTGATTCAGTGTGCTGTGTGTGTGCATCAGACAAAATGATTATTGTGGGTCGTGAATCAGGCACCATCCATCGATACTCRTTACCAAAACATGCCCTTGAAATGAAGCATGTTATCAACACTCGCCCTCATCAGCTGTCACTCAACTGTAACTCATCGCGTCTTGCTATCATAGATATCTCGGGTATCTTGACTTTCTTTGATTTGGAAGCACGTCGAATTGACCCGACAAGAAATGAAACTGTGATCGGCGAAGCCTTGAAATTTGAACGCAAAGACGTCTGGGATATGAAATGGGCCGATGATAATAACGAGTTGTTTGCTATGATGGAAAAGACTCGAATGTACATYTTTAGAAACTTGGATCCTGAGGAGCCCATTCTAAGCTCAGGATACATATGTCAGTTCAACGATCTGGAAGTTAAAGCCGTCTTGCTTGATGAAATAATGAAGGATCCTGATCATCCGACCAAAGAAAACATGATTGACCTCGAAGTGAAGTCTTTAAGAGATGCACGTGATCTACTAGAGAAGGTTGGAATACCGGATGCGTATCAATTCATTGAAGACAACCCTCATCCCAGGCTATGGCGTCTGCTTGCTGAATCATCCTTGGAGAGACTGGAACTRGAGGTAGCTGACAAAGCGTTTGTTCGATGTTCGGATTATCAAGGCATTCGGTTTGTGAAAAGACTGACTAAACTAGACGACGAGAGTAAAAAGAGAGCGGAAGTTGCTGCGTATTTTAAACGGTTTGAAGARGCAGAGCGTTTGTACCTGGAGATGGACCGAAGGGATTTGGCCGTTGAGCTGCGCTTAAAACTTGGGGACTGGTTCCGTGTTGTGCAACTTCTGAAAACAGGTGGAGCAGGAGGAGATGACCAACTTCTTGAACAGGCCTGGAATGCTATCGGTGATTATTACGCTGACCGACAGAAGTGGCAGAAYGCCGTTACGTACTATGTTCAAGGACGAAACCAAGAGAGATTGGCTGAGTGTTATTACATGTTAGAAGACTATAACGGTCTAGAGTCGATGACAAATAGTCTGCCTGAAAACCATAAACTCTTGTCTGAAATTGCTGAAATGTTTAAGACGGTTGGCATGTGTGAACAAGCTGTCTTAGCTTTCTCAAAGACCAATAAAATCAAGGAAGCAATCGACTGCTGTGTTCACCTCAACCAGTGGGACCAGGCCATCGCGTTAGCCAAAGAACACAACATAAAAGAGATAGATAAACTACTTGCCAAGTACGCATCACATCTACTGGAGAAGAACAATATATTGAGTGCAATTGAACTCTAYCGTAAAGCCAATCATTTTATAGATGCAGCAAAGCTTCTCTTCAAGCTTGCTAAAGAAACAACAAACCCAARGACGAATCCTTTACGAGGGAAAAAGCTATATGTCCTCGCAGCTTTGCTGATCGAAGAGTATCATGAGCATGTCAAGAACACGAGCAGGAAGACCGCTGGTGGCGGCGACAAACGCAAAACTCGAGAGGCGACCACAGCACTGGAAGGACTACTTGAAGAAGAYGCCATTGCAACTGAAGAGAGTAAACTGATTGACAACGCCTGGAGAGGTGCTGAGGCGTATCATTTCTTTTTACTGGCTCAAAAGCAGCTTTACGAGGGCTATCTAGAGGCCAGCATGAAAACGGCGCTACACCTTCGTGAGTATGAAGATGTCATGGACGCGTCGTGTATCTTTTCATTGCTCGCTCTTGTTAGCTGTGCAAATCGATCGTTTGGTACTTGTTCCAAGGCGTTTATTAAGCTAGAGCTTCTAGATGACATCTCAGACGAGCAACGACAAGCTTATGAAAATCTTGCGCTAGAGATATTTACCAAACATTCTCCGAAGGATTCTCGTGGTAACAAGGTCGAATGCACAAACTGCGAAACAATGATACCTGATTGGAGYCAAGTATGTCCTAACTGTGATACCAAGTTCCCTACGTGTGTCGTTACTGGTCGACCWTTAATGGACTATCAGTTCTGGATGTGCAGTAAATGTAAGCACAGAGCTTACGAACAAGAAATCGCTTCTCTTAACTTCTGCCCTCTCTGTCATTGTTCTATCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6N6J5	WD repeat-containing protein 35 OS=Rattus norvegicus OX=10116 GN=Wdr35 PE=1 SV=1
Q8BND3	WD repeat-containing protein 35 OS=Mus musculus OX=10090 GN=Wdr35 PE=1 SV=3
Q9P2L0	WD repeat-containing protein 35 OS=Homo sapiens OX=9606 GN=WDR35 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002339 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR017233 all species →	Family	WD repeat protein 35	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR039857 all species →	Family	Intraflagellar transport protein 122/121 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12764 all species →	WD REPEAT DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19674	WDR35, IFT121; WD repeat-containing protein 35	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27707.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

44.3Max TPM

17.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	14.12	20.93
whole animal · symbiotic	36	33	21.46	44.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.93
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.96
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.92
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.72
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.66
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.59
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.53
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.13
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.87
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.66
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.22
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.08
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.02
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.92
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.82
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.78
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.77
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.59
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.54
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.34
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.09
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.94
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.40
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.18
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.04
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.35
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.30
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.63
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.54
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.03
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.46
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.24
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.97
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.29
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.28
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.14
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.89
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.93
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.67
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.29
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.12
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.36
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.98
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.75
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.25
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.22
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.71
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.33
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.58
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.40
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.31
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.76
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.72
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.67
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.50
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.70
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.87
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.83
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.76
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.73
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.65
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.20
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.90
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.82
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.71
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.26
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.