Gene detail

Detailed information of KXJ27753.1 in Exaiptasia diaphana

Genomic Location: LJWW01000017.1:399876...402458
NR annotation: KXJ27753.1, Nucleoside diphosphate kinase 6 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3DL53	Nucleoside diphosphate kinase 6 OS=Xenopus tropicalis OX=8364 GN=nme6 PE=2 SV=1
Q6DI51	Nucleoside diphosphate kinase 6 OS=Danio rerio OX=7955 GN=nme6 PE=2 SV=1
O75414	Nucleoside diphosphate kinase 6 OS=Homo sapiens OX=9606 GN=NME6 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002247 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00334 all species →	NDK	Nucleoside diphosphate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001564 all species →	Family	Nucleoside diphosphate kinase	Interproscan
IPR036850 all species →	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR023005 all species →	Active_site	Nucleoside diphosphate kinase, active site	Interproscan
IPR034907 all species →	Domain	Nucleoside diphosphate kinase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46161 all species →	NUCLEOSIDE DIPHOSPHATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0006183 all species →	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241 all species →	Biological Process	CTP biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00940	ndk, NME; nucleoside-diphosphate kinase	EC:2.7.4.6	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27753.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

52TPM > 0

2Conditions

7.8Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	27	2.69	7.79
whole animal · symbiotic	36	25	2.13	5.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.79
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.33
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.32
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.06
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.97
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.78
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.24
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.14
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.11
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.05
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.92
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.75
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.69
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.41
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.41
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.11
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.07
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.03
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.85
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.74
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.69
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.50
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.28
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.24
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.90
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	1.78
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.62
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.34
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.28
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.17
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.09
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.97
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.79
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.75
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.74
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.69
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.64
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.62
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.28
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.10
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.81
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.75
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.70
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.69
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.25
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.21
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.14
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.98
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.79
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.73
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.69
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	1.39
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.