Gene detail

Detailed information of KXJ27762.1 in Exaiptasia diaphana

Genomic Location: LJWW01000017.1:938103...954484
NR annotation: XP_020894624.1, protein retinal degeneration B [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ27762.1

ATGTTGATCAAGGAGTACAGGATTCCTTTGCCGATGAGCGTCGAGGAATATCGCATCGCTCAGCTTTACATGATTCAGAAAAAGAGTCGTCTAGAAAGCACTGGTGAGGGAAGTGGTGTTGAAATACTTGAAAATCATCCTTATAGAAGCAAAGATGGTGAATGTGGACAGTACACCAAAAAAATATACCATATTGGGAACCACCTGCCTAGCTGGTTGAAGGCAATTCTTCCAAAGTCAGCTTTGAGAGTTGAGGAAGAAGCTTGGAATGCTTATCCATATACAAAGATGAGAACAACATGCCCCTTTGTAGAGAAGTTTTATGTTGATGTAGAAACATATTATCTTCCTGATGCTGGACAATCGGAGAATGTTTTTAATCTTAGTCCTACTGAACTAAGCAACAGAGAAGTTGACCTAATAGATCCTATAATTGAGGAGGTTTTAACATCTGATTATTGCGAAGAAGAAGATCCTTTAATGTACAAATCTGAAAAGACGGGAAGAGGACCAATGCCTGCGAACTGGTTGGAGCAATATCAGACAGATAAGCCTCCATCTAGTGTCATGTGTGCCTATAAACTCATCAAAGTTGAGTTCAGATATTGGGGCATGCAGAACAAAATTGAACATTTTATTCATAGTGGCCTTCGGCGTCCAATGCTAATGGGACATAGACAAGCCTGGGTTTGGCAGGATGAGTGGTTTGGTCTTACAATAGAAGACATACGACAACTTGAAGAAGAAACAAGAGCTATTCTTAATCAAACTATGGGAAAGCAATTTGATTCACTGCAGCTTGGAAACCTGTCAGATCGAGAGAGTGACCAGGAAGGTGGTTTTGCTAGCACTGAGAGCAGGGGAAGTGTAGTACATGTCCCATCACTTATCGCAAAGCGTGAATCTATTCATGAAATAAATGGATCAAAACTGGAGCTTATATCAAAATTTTCCATGGAGGATTCAGAGGAAAGCTCACCAATTCCTCCCATTGAGATAAAAATAGAAAGACATGACTTCGAACGCGAGGGAATGCCATTTGTGTCACAAGAACGTGACCAGGAGTACCCAACTAACATGAGAGACTCATTCCCTCGTTCTATAAGGTCGTTTAGGGACAGCAAACGAGGAAGTGTTACTAGTTATGAAAGTGCTTCAGCATCATTGCCGCCATGCCTGTCRCGAAGAATGTCATGTACTGATGTGATGAAGGGATGGCAAATGACTAGCATTGAGACTTCAGATTCCACTTCAGAAGATGAATTTTTTGATGCCCAAGAGGAACTTGATAGTCCTTCAGAAGGCGAACCAATTGGAACCAATCTCCTCAGCATCCAAAACGTCGAGCTCAGTAATAGTTTTAAAAGCTTGGAACTTGACTCGGATTCGTCCCGTGGGTCTCGGGAATCTCTTGACTCTGTCGGGTCGTCGATCATCGATCAATCTCGGGGGCCCCCTTACGTTCATAAAGAAAAATTGTGCAAGAAAGTTAGTGATACTTCAATATATTCAATTTCCTCGTGTAAAATAACCACACTTCTGTTAGTGGTTCATGGTGGCAGCCAACTAGATTGTGACCAGGATAGTTTATCTAAAGAAATGGACTGTGAGTTACTGAGAGAAAGTTTTGAAACGGTCATAAAAACGCACTATAGGGGTGCCGTGGGGAGAATAGCAATACGTTTGGTAGAGTGTCCTGCTGTCTGCTCCAAGGCTCTGGGTATACTGTCTCATCTATGTCCGTATGTTGAAAATGACTCGGATACAATGTCGTGTTATTCTGGGATTTGTCCCATCTCCAGTAGCTTCCCCATAAGTGCTATCCCTTTAATGGTGACATCCTCCCCAAATTACGACGAAATGGTGGCAACGATGATCGGCAATACTAACCGCGTATATCACGATTTTCTTCGTTCAGAAGAAGGACAGGGTTTCTCTGGAGAGACTTGCATCATTGGTGATTGTATGGGTGCATTGTTAGTGTACGATGCTCTTATATCATTCCGAGGAAGAACAACAAGTGTTACCTCATCGAACAGTTATCATATCTCATATCCACCAAACTCATCAAACTCGTCTTTAAATGGTGACTCGGATGTCACAGGCTCCCCCCGACTGGAAAAGCCGCGGAGGATCAGTGCTCATATACCTCCAAACAAGAACACTTTAGCTACATCTAAAAGTCTGCGCATGTGTGTTAGTAGTGGAAACATCCGTGAGAACCTGACAAAAAGCACTGTGGAAGGTGAGAGTGGGCAGGGCTCTCCGGAATCTCAGACTATAGACACAGAACCTTCAAGTTTGAAACAAGGCATGGAAAATAAGAACAGCTGTGATGGCTTAAACTTGTCACTTGATTCTATTGATCAAGTTGCATTCGACTTTGAAGTGTCCAAGTTTTTTGCATTTGGTTCCCCCATTGGACTTGTTGTTGGTTCCCGGAAATTCGTTCGAGGCGAGGATTATAAAGAACTACCTCCAAGGCCTACATGCGCACAGTTTTATAATCTTTTCCATCCATTTGACCCATCGGCTTCACGAATCGAGCCTCTCATCATTCCAGGATTTGTCCAAACACCATCAGTGAACGTTCCACGATATCATCATTTTCCTTTGGGTGATGGAAAATCTCATTTTCTCAGGGACACTTGGTCTATGAACCCTGAACTGTTTAGTAACCAAACATCGTCTCCTCGACTTAGTCCTCGGGGATTGTCTCGACCGGGCATTGTAAGACACGATAGTAATATGAGTACTTCTAGTGTGTCGTCATTGGATAGTTTATGCGATAGCAAATTCCCAGAGGTGGAACCAGGTTACTATTGGTGGGGTCAAAAGCGATTAGATTATGCGCTGTACTGTCCAGAAGGCTTACAACAATTTCCGACCGCTGTCCTTTCACCGCTTTTCCACGTTAGTTACTGGGAATCYWSTGATGTGGCGGCGTTTGTCGTTAGGCAGGTTCTTCATGGAGATTGGAATATCTCAAGTGTATCTTCACCAAGCAAAAGAGGAATGACTTTCTCGCCCTCGCAACCAAGGGAAAAATGGCTGCGGCGAAGAACAGCCATTAAAATCAAGAACCTGAACTCGAATCATCGTGCTAATGACAGTGTAGTTATGGAGGGAAATGCACAGGTTCTAACGGCTAGGTTCATGTATGGACCACTAGATATGGTATCGCTGACTGGTGAAAAGATTGATATTTACGTAATGTCGCAGCCCCCCTCAGGTGAATATGTATTACTAGACACGGTTATAACGGCCAGCGGTGGTCGGCTAGTGTACACAATACAAGATGACAAGAAACTTCCTGTCGGAATATATCCGTTAAAGATGGTAGTCAGAGGAGATCATACCTGGGTTGATAGTAATCTCGCTGTCCTGCCACCAAAGACAGAGTCAGTCGTATTCAGCATCGATGGGTCATTTACTGCTAGTGTGTCTATAAGAGGAAAGGATCCTAAAGTACGCGCAGGAGCTGTGGATGTCGTAAGACACTGGCAAGAACTTGGGTTCTTGATTATTTACGTCACAAGTCGCCCAGATTTCCAAAAACATAAAGTCATGTCATGGTTAGCACAGCATAACTTCCCTTACGGTCTGGTCGCCTTTGGAGATGGAATCACAAAAGAAATACAGAAACATAAGACGGAATTTTTGCGAAAAGTTGTTAATGAGGCCAGTGTAATTGTCCATGCTGCATACGGATCCATAAAAGATATATCAGTGTACTCAAGTGTTGGTTTAAAACCTGACCAAATCTTTTGTGTTGCGAAACACTACAACAGAAAATACGAAAGACAGGCTCTGTTCCTAAAAGATGGGTATGCCGTTCACCTTAACGAGATGTCAAGTAATCCAATCTCACGACCTTCGGCTGGAAATTCTCGTCTTATTCTTCGTCGAGGATGTTTTGGATTATCAACTCGGCCATCCAAAGCACGCCACAAACAACTCAAACGAACAAGTTCAGACAAGAGTAAAGCCACAAAGAACCTTGAGCCTTYACAATCTGAAAGCGGTCAAATGTTATCAGGGACATTCAATTATTCCTCGTTTCGACAGACCAAAGGTCTTTCCATCACTAAAATACAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BZ72	Membrane-associated phosphatidylinositol transfer protein 2 OS=Homo sapiens OX=9606 GN=PITPNM2 PE=1 SV=1
Q6ZPQ6	Membrane-associated phosphatidylinositol transfer protein 2 OS=Mus musculus OX=10090 GN=Pitpnm2 PE=1 SV=2
P43125	Protein retinal degeneration B OS=Drosophila melanogaster OX=7227 GN=rdgB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004721 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004177 all species →	Domain	DDHD domain	Interproscan
IPR031315 all species →	Domain	LNS2/PITP	Interproscan
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008525 all species →	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24069	PITPNM; membrane-associated phosphatidylinositol transfer protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27762.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

70TPM > 0

2Conditions

71.1Max TPM

38.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	33.75	71.06
whole animal · symbiotic	36	36	42.88	61.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	71.06
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.74
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.45
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.03
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.56
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.07
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	42.00
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.85
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.64
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	40.52
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.91
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.54
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.38
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	37.15
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	36.92
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.14
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.82
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.74
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.58
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.24
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.08
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	31.23
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.55
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.00
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.94
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.60
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.37
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.49
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.96
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.58
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.05
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.60
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.20
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.94
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	61.28
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	60.80
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.95
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.77
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	58.72
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.52
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.43
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.80
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	55.49
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.88
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.78
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.63
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.24
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.97
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.97
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.42
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.38
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.94
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.81
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.14
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.39
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.22
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.48
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.39
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.13
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.48
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.84
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.83
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.66
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.62
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.60
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.38
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.38
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.86
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.44
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.90

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.