Gene detail

Detailed information of KXJ27771.1 in Exaiptasia diaphana

Genomic Location: LJWW01000017.1:109946...116795
NR annotation: KXJ27771.1, Lipopolysaccharide-induced tumor necrosis factor-alpha factor-like [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QGW7	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Gallus gallus OX=9031 GN=LITAF PE=2 SV=1
Q6GMG8	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Danio rerio OX=7955 GN=litaf PE=2 SV=1
Q6P828	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Xenopus tropicalis OX=8364 GN=litaf PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000706 (this species only)
Transcription factor family	zf-LITAF-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10601 all species →	zf-LITAF-like	LITAF-like zinc ribbon domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006629 all species →	Domain	LPS-induced tumour necrosis factor alpha factor	Interproscan
IPR037519 all species →	Family	LITAF domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23292 all species →	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19363	LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor	-	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27771.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

69TPM > 0

2Conditions

107.1Max TPM

50.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	53.33	89.78
whole animal · symbiotic	36	35	48.33	107.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	89.78
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	81.95
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.84
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.63
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.28
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	65.17
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.61
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	63.33
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.69
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.23
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.17
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	60.55
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	59.67
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	58.85
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	56.51
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	55.89
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.70
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.61
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	54.23
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.97
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	53.29
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	52.45
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.46
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.14
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.52
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.64
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.42
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.40
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	46.74
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.71
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.14
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.53
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	41.71
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	38.16
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	107.12
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.71
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	63.44
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	62.91
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	57.35
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.28
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	56.03
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	54.71
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.86
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.84
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.42
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	51.33
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.45
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.34
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.22
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.91
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.45
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	49.34
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.39
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.87
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.75
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.62
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.20
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.03
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.35
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	43.66
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.24
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.94
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.69
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.97
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.84
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.95
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.45
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.95
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.23
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.