Gene detail

Detailed information of KXJ27781.1 in Exaiptasia diaphana

Genomic Location: LJWW01000017.1:792966...799184
NR annotation: XP_020894691.1, F-box only protein 21 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R5S1	F-box only protein 21 OS=Pongo abelii OX=9601 GN=FBXO21 PE=2 SV=1
Q8VDH1	F-box only protein 21 OS=Mus musculus OX=10090 GN=Fbxo21 PE=1 SV=1
O94952	F-box only protein 21 OS=Homo sapiens OX=9606 GN=FBXO21 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006508 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08755 all species →	YccV-like	Hemimethylated DNA-binding protein YccV like	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13369 all species →	Transglut_core2	Transglutaminase-like superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011722 all species →	Domain	Hemimethylated DNA-binding domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR032698 all species →	Domain	Protein SirB1, N-terminal	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036623 all species →	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31350 all species →	SI:DKEY-261L7.2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10301	FBXO21; F-box protein 21	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27781.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

82.0Max TPM

22.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	21.39	82.00
whole animal · symbiotic	36	34	23.58	46.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	82.00
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.50
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.96
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.49
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.60
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.06
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.77
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.62
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.18
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.78
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.54
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.32
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.29
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.02
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.02
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.67
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.66
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.52
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.50
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.50
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.57
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.68
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.19
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.61
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.51
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.28
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.16
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.15
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.65
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.04
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.79
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.68
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.53
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.07
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.88
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	41.94
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.69
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.58
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.02
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.94
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.02
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.67
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.46
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.30
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.10
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.61
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.18
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.81
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.56
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.40
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.41
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.29
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.96
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.34
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.32
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.93
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.81
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.27
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.91
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.61
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.84
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.65
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.85
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.33
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.13
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.03
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.72
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.41
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.