Gene detail

Detailed information of KXJ27783.1 in Exaiptasia diaphana

Genomic Location: LJWW01000017.1:241396...244060
NR annotation: KXJ27783.1, tRNA dimethylallyltransferase, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3H1	tRNA dimethylallyltransferase OS=Homo sapiens OX=9606 GN=TRIT1 PE=1 SV=1
Q80UN9	tRNA dimethylallyltransferase OS=Mus musculus OX=10090 GN=Trit1 PE=1 SV=2
P07884	tRNA dimethylallyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MOD5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006450 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01715 all species →	IPPT	IPP transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039657 all species →	Family	Dimethylallyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11088 all species →	TRNA DIMETHYLALLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0052381 all species →	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00791	miaA, TRIT1; tRNA dimethylallyltransferase	EC:2.5.1.75	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27783.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

60TPM > 0

2Conditions

9.1Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	30	4.40	7.93
whole animal · symbiotic	36	30	5.13	9.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.93
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.43
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.00
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.63
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.39
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.38
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.26
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.21
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.21
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.07
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.98
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.59
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.41
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.37
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.32
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.21
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.71
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.67
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.54
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.51
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.50
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.49
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.34
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.26
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.13
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.12
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.05
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.72
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.50
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.49
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.07
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.79
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.69
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.48
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.44
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.20
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.51
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.46
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.06
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.95
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.56
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.50
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.15
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.08
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.08
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.68
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.62
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.43
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.40
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.40
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.38
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.16
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.07
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.02
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.01
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.93
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.78
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.54
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.61
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	2.48
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.