Gene detail

Detailed information of KXJ27861.1 in Exaiptasia diaphana

Genomic Location: LJWW01000017.1:329555...332267
NR annotation: XP_020894591.1, E3 ubiquitin-protein ligase DTX4 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86UW9	Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens OX=9606 GN=DTX2 PE=1 SV=3
Q8R3P2	Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus OX=10090 GN=Dtx2 PE=1 SV=2
Q9Y2E6	E3 ubiquitin-protein ligase DTX4 OS=Homo sapiens OX=9606 GN=DTX4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000869 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02825 all species →	WWE	WWE domain	Family	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018123 all species →	Domain	WWE domain, subgroup	Interproscan
IPR037197 all species →	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR004170 all species →	Domain	WWE domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR039398 all species →	Family	Deltex family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06058	DTX; deltex	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27861.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

66.1Max TPM

16.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	15.93	39.26
whole animal · symbiotic	36	32	16.44	66.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.26
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.67
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.65
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.18
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.04
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.98
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.45
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.39
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.32
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.16
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.61
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.45
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.22
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.16
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.88
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.80
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.57
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.52
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.08
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.06
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.65
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.64
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.28
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.79
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.59
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.57
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.57
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.26
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.20
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.08
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.56
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.55
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.81
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.56
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	66.12
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.34
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.32
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.22
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.89
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.69
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.96
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.32
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.90
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.74
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.57
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.51
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.37
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.17
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.84
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.55
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.72
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.28
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.04
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.97
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.95
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.69
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.68
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.35
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.00
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.92
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.32
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.20
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.82
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.38
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.27
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.86
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.