Gene detail

Detailed information of KXJ27888.1 in Exaiptasia diaphana

Genomic Location: LJWW01000016.1:222768...229115
NR annotation: XP_020893856.1, retinal dehydrogenase 1 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27463	Aldehyde dehydrogenase 1A1 OS=Gallus gallus OX=9031 GN=ALDH1A1 PE=2 SV=1
Q8MI17	Aldehyde dehydrogenase 1A1 OS=Oryctolagus cuniculus OX=9986 GN=ALDH1A1 PE=1 SV=1
P47738	Aldehyde dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Aldh2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR029510 all species →	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016160 all species →	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11699 all species →	ALDEHYDE DEHYDROGENASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004029 all species →	Molecular Function	aldehyde dehydrogenase (NAD+) activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07249	ALDH1A; retinal dehydrogenase	EC:1.2.1.36	Retinol metabolism	ko00830	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27888.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

66TPM > 0

2Conditions

47.0Max TPM

22.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	33	19.97	28.62
whole animal · symbiotic	36	33	25.32	46.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.62
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	28.43
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	27.24
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.93
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.64
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.53
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.50
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.61
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.59
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.50
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.37
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.74
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.51
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.39
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.19
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.61
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.05
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.04
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.47
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.38
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.31
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.18
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.88
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.21
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.75
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.32
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.03
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.86
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.69
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	17.55
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.47
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.23
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.23
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.97
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.99
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	39.51
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	36.45
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.11
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	31.67
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.94
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.48
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.14
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	29.07
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.92
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.57
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.57
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.10
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.89
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.02
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.99
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.61
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.08
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.94
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.97
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.91
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.91
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.39
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.37
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.03
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.52
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.39
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.28
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.13
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.00
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.92
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.70
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.