Gene detail

Detailed information of KXJ27954.1 in Exaiptasia diaphana

Genomic Location: LJWW01000016.1:1...11550
NR annotation: KXJ27954.1, E3 ubiquitin-protein ligase RNF25, partial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZR0	E3 ubiquitin-protein ligase RNF25 OS=Mus musculus OX=10090 GN=Rnf25 PE=1 SV=2
Q5E9N3	E3 ubiquitin-protein ligase RNF25 OS=Bos taurus OX=9913 GN=RNF25 PE=2 SV=1
Q96BH1	E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens OX=9606 GN=RNF25 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773 all species →	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR039133 all species →	Family	E3 ubiquitin-protein ligase RNF25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13198 all species →	RING FINGER PROTEIN 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10640	RNF25, AO7; E3 ubiquitin-protein ligase RNF25	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27954.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

63TPM > 0

2Conditions

21.6Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	31	4.14	9.22
whole animal · symbiotic	36	32	6.43	21.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.22
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.48
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.10
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.71
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.51
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.35
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.81
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.29
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.19
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.04
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.95
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.93
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.79
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.58
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.53
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.52
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.44
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.36
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.35
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.33
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.30
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.26
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	4.19
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.89
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.60
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.41
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.40
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	3.03
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.68
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.63
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	2.21
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.61
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.79
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.97
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.24
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.98
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.97
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.87
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.71
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.51
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.39
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.35
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.21
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.18
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.91
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.68
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.64
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.64
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.53
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.51
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.48
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.34
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.27
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.23
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.18
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.11
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	6.01
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.93
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.79
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.47
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	5.42
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	4.93
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	3.67
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.