Gene detail

Detailed information of KXJ27981.1 in Exaiptasia diaphana

Genomic Location: LJWW01000015.1:727768...730006
NR annotation: XP_020893096.1, coenzyme Q-binding protein COQ10 homolog B, mitochondrial [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H8M1	Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Homo sapiens OX=9606 GN=COQ10B PE=1 SV=1
Q5RD79	Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Pongo abelii OX=9601 GN=COQ10B PE=2 SV=1
Q3THF9	Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Mus musculus OX=10090 GN=Coq10b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006245 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03364 all species →	Polyketide_cyc	Polyketide cyclase / dehydrase and lipid transport	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044996 all species →	Family	Coenzyme Q-binding protein COQ10-like	Interproscan
IPR005031 all species →	Domain	Coenzyme Q-binding protein COQ10, START domain	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12901 all species →	SPERM PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0045333 all species →	Biological Process	cellular respiration	Interproscan
GO:0048039 all species →	Molecular Function	ubiquinone binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18588	COQ10; coenzyme Q-binding protein COQ10	-	Cofactor metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ27981.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

68TPM > 0

2Conditions

208.1Max TPM

52.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	34	63.05	208.12
whole animal · symbiotic	36	34	42.78	189.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	208.12
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	115.49
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	106.88
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	105.40
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	101.53
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	99.73
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	86.54
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	84.76
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	78.72
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	76.20
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	75.27
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	74.79
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	72.90
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	70.48
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	69.74
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	68.30
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	62.10
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	61.60
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	51.74
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	50.76
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.53
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	45.84
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.74
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	44.42
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.94
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.65
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	43.54
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	39.12
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	35.32
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.76
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	33.46
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	32.03
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	30.73
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	29.57
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	189.72
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	77.63
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	59.94
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	53.31
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	52.71
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.89
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	50.75
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	48.18
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	47.14
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.72
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.69
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	46.13
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	45.94
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	44.25
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.43
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	42.06
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.94
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	40.61
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.45
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.02
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	38.00
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.25
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.30
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	35.17
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	34.95
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	33.63
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.52
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.43
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	32.23
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.64
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.93
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	26.30
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.82
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.31
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.